Gossypium hirsutum (upland cotton): 107898754
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Entry
107898754 CDS
T04793
Name
(RefSeq) pre-mRNA-processing protein 40A-like isoform X1
KO
K12821
pre-mRNA-processing factor 40
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107898754
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107898754
Spliceosome [BR:
ghi03041
]
Complex A
U1 snRNP components
U1 related factors
107898754
Complex B
107898754
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
107898754
NCBI-ProteinID:
XP_040946868
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All DBs
Position
D04:54331506..54345091
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AA seq
994 aa
AA seq
DB search
MDPSQNFPPPMSGQFRPVVPSQQPQQFVSVPPQQFQPVGRGVTVMNAGFPSQTPQPQIPQ
VMQQLPARPGQPGHILPPPPSVSLPAAQPNLHVNPGASVPQPNIQAPNNYFPGVPASHLS
SSYTFAPSSYGQVTVSHNAMAQYQPMAQLQAPNVPVGGQVGIHVSQSTSVTSAQQIGEQP
SASTATIPPKPTEEALTDWIEHTSANGRRYYYNKKTRQSSWEKPLELMTPIERADASTNW
KEYTSPDGRKYYYNKVTNLSTWSLPEELKLAREQVEMVSAKGPLSEVSSHIPAPVPPASK
AQSGADTPSTIIQGASSSPVPVAPVPSSSKIESVVVSGSDLPVATSSTVTNVDVVQIVED
TITPSVAVSESSEVSLSVADAATTLMNNISKVSSLDMVSSEGVSTQNADETVKDVVVSEK
INNALEEKAIDQESLTYASKQEAKDAFKALLESANVGSDWTWDQAMRVIINDKRYGALRT
LGERKQAFNEFLGQKKKQDAEERRIKQKKAREEYKKMLEECLELTSSTRWSKAVTMFEND
ERYKAVEREKDRKDFFENYIDELRQKERVKAQEQRKQNVMEYRRFLESCDFIKANSQWRK
VQDRLETDERCSRLDKIDRLEIFQEYIRDLEKEEEEQRRIQKEELRKTERKNRDEFRKLV
EGHVAAGTLTAKTHWRDYCMMVKDSPPFLAVASNTSGPTPKDLFEDVAEELQKQYDDDKA
RVKDAVKLRKICLASTWTLEDLKAAILEDISSPPISDVNLKLIFEELLERVKEKEEKEAK
KRKRLADDFFDLLYSMKEITSSSAWEDCKHLLESSQEFSSIGDEDICKGIFDEYVKQLKG
DAKEKERRRKEDKAKKEKERDERERRKEKHGRDKERGYEREKEEHLREGPSEAHGDISEV
HDENENKRSGKEDSKKHRKRHQSSVDNSNETEKDRTKTHRHSSDRRKSKKHASTPESDNE
SRHKRHKRDHRNGSRRNLDPEELEDGEFGERESQ
NT seq
2985 nt
NT seq
+upstream
nt +downstream
nt
atggacccttctcaaaattttcccccacctatgtctggtcagttccgacctgttgttcca
tctcagcagccacaacaatttgtttcagtgcctcctcagcagtttcaacccgttggcaga
ggagttactgtgatgaatgctggatttccttctcagaccccacaaccccaaattcctcaa
gtaatgcagcaattacctgctagaccaggccagccaggccatattctacctccaccaccc
tcagtttcattgccagctgctcagcctaatctacatgttaatccaggggcatcggtgcct
caacctaatattcaagctccaaacaactattttcctggggtcccagcatcacacctctct
tcatcatatacctttgcaccgtcttcttatggccaggtaacggtgtctcataatgccatg
gctcaatatcaacccatggcacaattgcaggcacctaatgttcctgttggaggccaggtg
ggtatccatgtgagtcagagtacttctgtcacatccgcacagcaaattggtgaacaacct
tctgcttccacagctactattccgccgaagcccactgaagaggctttaacagactggatt
gaacacacttctgcaaatggacgaaggtattattacaataagaagacacggcaatctagt
tgggagaagccattggaattgatgacaccgattgagagggcggatgcatcgactaactgg
aaagaatatactagtcctgatggaagaaagtattactacaacaaggttacaaatctatca
acatggtcactccctgaagagctgaagttggctcgtgaacaagtagaaatggtgtctgcc
aaaggaccactgtcagaagtttcttctcatattccagctcctgtacctcctgcaagtaaa
gcacaatctggtgctgatacaccgtctacaataattcaaggagcttcctcaagtccggtt
ccagtggcaccagttccttctagtagtaaaattgaatctgtggtggtttctgggtcagat
ttacctgttgcaacttcttcaacagtgaccaatgtagatgtggttcagatagttgaggat
actatcacaccatctgttgctgtttcagaaagttctgaagtttctctctcagtggctgat
gctgctacgacactgatgaataatatcagcaaagtttcttctttggatatggttagttct
gaaggagtttcaacacaaaatgcagatgaaactgtaaaagatgtggtagtgagtgagaaa
attaacaatgcattggaagagaaagcaattgatcaagaatctttgacttatgccagcaag
caagaggctaaagatgcattcaaagctcttttggagtctgcaaatgttggttctgactgg
acatgggatcaggccatgagagtaataataaacgacaaaagatatggtgctttgagaaca
cttggggagagaaagcaagcttttaatgagtttttgggtcaaaagaaaaaacaggatgct
gaggaaaggcggattaaacagaaaaaagcccgggaagaatataaaaaaatgttagaagag
tgcttggagttgacgtcatccacaagatggagcaaagcagttactatgttcgaaaatgat
gagaggtataaagctgttgaacgggagaaggataggaaggatttttttgagaattacatc
gatgaactcaggcaaaaggaacgggtgaaggcacaggagcagcgtaagcagaatgttatg
gagtacagaagatttttggaatcttgtgacttcattaaggcaaatagccagtggcgaaaa
gttcaggaccgcttagagactgacgaaagatgttcacgtcttgacaaaattgaccgcttg
gaaatatttcaggaatatatacgtgacttagagaaggaagaagaggagcagaggaggata
caaaaggaagaactgaggaagacagagcgtaaaaatcgtgatgagttccgcaagttggtg
gaaggacatgttgctgcaggaacacttaccgccaaaacccattggcgtgattattgcatg
atggttaaagattcgcctcccttcctagcagttgcatccaacacctcaggtccaactcca
aaagatttgtttgaagatgtagctgaggagcttcagaaacagtacgatgatgataaagct
cgagtaaaggatgcagtgaagttgagaaagatttgtttggcatcaacttggactctagaa
gacttgaaggctgccattttggaggatattagctctccacctatatcggatgttaacttg
aagctgatttttgaggaattacttgaaagggtcaaggagaaggaggagaaagaagctaag
aagcgtaaacgtcttgctgatgacttctttgatttattgtattctatgaaggagattaca
tcatcttcagcatgggaggattgcaaacatcttcttgaaagtagtcaggaattcagttcc
attggggatgaagacatctgcaaggggatatttgatgaatacgtaaaacagttgaaagga
gatgcaaaagagaaggaacgaagacggaaagaagacaaggcaaagaaggaaaaggagaga
gatgagagggagaggaggaaggagaagcatggaagggacaaagagagaggatacgagaga
gaaaaggaggaacacttgagggagggaccttcagaagcacatggtgatataagtgaagtt
catgatgaaaatgaaaataaacggtcaggaaaagaagacagcaagaaacatcgtaaacga
catcaaagttcagtggacaattcaaacgaaactgaaaaagatcggactaagacccacagg
catagcagtgatcgcagaaaatcaaaaaagcacgcatcgacacctgaatctgataacgaa
agcaggcataagagacacaagcgagaccatcggaacggttcacgtagaaatcttgacccc
gaggaacttgaagacggagaatttggtgaaagggaaagtcagtag
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