Gossypium hirsutum (upland cotton): 107898806
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Entry
107898806 CDS
T04793
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
107898806
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107898806
03009 Ribosome biogenesis [BR:
ghi03009
]
107898806
04131 Membrane trafficking [BR:
ghi04131
]
107898806
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ghi04147
]
107898806
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
107898806
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
107898806
Membrane trafficking [BR:
ghi04131
]
SNARE
SNARE associated proteins
Others
107898806
Autophagy
Aggrephagy
Other aggrephagy associated proteins
107898806
Exosome [BR:
ghi04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
107898806
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_2
AAA_16
AAA_5
AAA_22
AAA_33
AAA_14
CDC48_2
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
AAA_28
Mg_chelatase
ATPase_2
AAA_18
Parvo_NS1
nSTAND_NTPase5
AAA_lid_PRS2_C
NB-ARC
ABC_tran
Viral_helicase1
AAA_7
NACHT
IstB_IS21
TsaE
DUF815
Vps4_C
Zeta_toxin
AAA_24
Zot
Molydop_binding
Motif
Other DBs
NCBI-GeneID:
107898806
NCBI-ProteinID:
XP_016679841
UniProt:
A0A1U8INZ4
LinkDB
All DBs
Position
D11:72384808..72392965
Genome browser
AA seq
805 aa
AA seq
DB search
MSNQAESSDSKGTKRDFSTAILERKKAPNRLVVDEAINDDNSVVSMHPDTMEKLQLFRGD
TILIKGKKRKDTICIALADDTCDEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH
ILPVDDTIEGVTGSLFDAYLKPYFLEAYRPVRKGDFFLARGGMRSVEFKVIETDPPEYCV
VAPDTEIFCEGEPVKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTNGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLEKISKETHGYVGADLAALCT
EAALQCIREKMDVIDLEDDSIDAEILNSMAVTNEHFATALGTSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGV
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI
FKACLRKSPLAKEVDLRALAKYTQGFSGADITEICQHASKYAIREDIEKDIERERRRREN
PEAMEEDVDDEVAEIKPAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFKFAE
TGSRAATSDPFATTAGGADEDDLYS
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaccaagctgaatcttctgattcgaaagggactaagagggattttagtacggcg
atcttggaaagaaagaaggctcccaatcggctcgttgttgatgaggcgatcaacgatgat
aactccgttgtttccatgcatcctgacaccatggaaaagctccagttgtttcgcggtgac
actatcctcatcaagggaaagaagaggaaagatactatctgcattgctctcgcagacgac
acatgtgatgaaccgaagatcaggatgaataaagttgtcagatcgaacttgagggttagg
cttggtgatgtcgtctctgtgcaccagtgtcctgatgttaagtacggaaaacgtgtgcac
atcttgcccgtggatgacaccatcgaaggggttactggaagtctttttgacgcctacctt
aaaccttactttcttgaagcgtaccgcccagtgaggaagggtgatttcttccttgctaga
ggtggaatgagaagcgtagaattcaaggttattgagaccgaccctcccgagtactgtgtg
gttgcaccggacaccgagatattctgtgagggagagcctgtaaagagggaagatgaaaat
agattagacgaggtcggttatgatgatgttggtggagtacgaaaacagatggctcaaatt
cgggaattagtggagcttccgttaaggcatccgcaactctttaaatcaattggtgtgaag
ccacctaaaggaattctgctttacggacctcctggatcaggaaagactttgatcgcccgt
gctgttgcaaatgaaactggtgctttctttttctgcatcaacggtccggaaatcatgtcg
aagttggccggagagagtgaaagtaatctccgaaaagcatttgaagaagcagagaagaac
gctccgtccattatatttatcgatgaaatcgattcgattgctcctaagcgagaaaaaaca
aatggtgaagttgagaggaggattgtttctcagcttttgacactaatggatgggcttaaa
tcccgggctcatgttattgttatcggggccacaaaccgtcctaatagcatcgatccagct
cttagaaggttcggaagatttgatcgggagattgatattggtgtccccgatgaagttggt
cgccttgaggtgcttcgtatccacacaaagaacatgaagctggctgaagatgttgattta
gaaaaaatttcgaaggaaacccacggttatgttggtgcagatcttgcagctctttgtacc
gaggcagcattacaatgcatccgagaaaagatggatgtgattgacctggaagatgattcg
atagatgctgagatattaaactctatggcagtcacaaacgaacacttcgcgactgctctt
ggaacaagcaatccatcagctctgcgtgaaactgttgttgaagtgcccaatgtcagttgg
gaagatattggaggccttgagaatgttaagagagagcttcaagagacggttcaatatcca
gtggagcatcccgagaagtttgagaagtttgggatgtcaccgtcgaagggagtgctattc
tacggccctcctggatgtgggaaaacccttctggccaaagctatcgcaaacgaatgtcag
gcaaatttcattagcgtcaagggtccggaattgctcacaatgtggttcggagaaagtgag
gccaatgttcgtgaaattttcgataaggctcgccagtctgctccttgtgtccttttcttt
gatgaacttgactcaattgctactcagagaggaagcagtgtcggagatgcaggtggtgtt
gccgatagggttctgaaccaacttcttaccgagatggatggcatgtctgccaagaaaact
gttttcatcatcggagccaccaaccgaccagacattatagatcccgcacttttgcggcca
ggtcgtctcgatcagttaatctatattcccctccccgacgaggactctcgtcatcaaatc
tttaaggcttgcttgaggaagtcaccacttgcaaaagaagtcgacctccgtgctcttgcc
aaatatactcaaggctttagcggtgctgatattaccgaaatttgccaacatgcaagcaaa
tatgccatcagagaagacattgagaaggacattgagagagaacggagaagaagggagaac
cccgaagctatggaggaagatgtggatgacgaagtggcagagatcaagccggcgcatttc
gaggaatcgatgaagtttgctcggaggagtgtgagtgatgctgatatccgaaagtaccaa
gcattcgcgcaaacgttgcagcaatctagggggttcggaagcgaattcaagtttgcagaa
accggttccagggctgcaacatctgatccttttgcaactacagctggtggagctgatgaa
gatgatctttacagttaa
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