Gossypium hirsutum (upland cotton): 107899032
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Entry
107899032 CDS
T04793
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase HAKAI homolog
KO
K15685
E3 ubiquitin-protein ligase Hakai [EC:
2.3.2.27
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107899032
04131 Membrane trafficking [BR:
ghi04131
]
107899032
04121 Ubiquitin system [BR:
ghi04121
]
107899032
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107899032
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
N6-methyltransferase complex
107899032
Membrane trafficking [BR:
ghi04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
107899032
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
107899032
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-C3HC4_3
DUF629
Motif
Other DBs
NCBI-GeneID:
107899032
NCBI-ProteinID:
XP_016680118
UniProt:
A0A1U8IUM6
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Position
D04:46957554..46959956
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AA seq
377 aa
AA seq
DB search
MLQIRLTKTPSSDAAGPVKPLPVETVTVACPDHLVIADLPVAKSIGAAISSSLVKTVGRK
SRRQLGERVHFCVRCDFPIAIYGRLSPCEHAFCLDCARSDSICYLCDERIQKIQTIKIME
GXFICAAPHCLKSFLKKTEFESHIHENHAALIQPNAEKEDDKDSEVQSAKQPTGSDAAVR
GLPRSVISPGSNPLLHDTEDKARWQQPREQLPSRPIMQPKGPLVFGQVPNYPLEPQSDDN
QFQQGFDRPGPHNHFQQGFDLQGTPQPDSSQFSDKLQGLLSENQYSEYPPMHSMQPPNFA
MPMNSNRTLTPYGVPPFPTDGCQPFYGAPYEMARQSKASDVGSEQGSLLSFPPGPVGGVN
YPTAYPPWNGGQPGVHF
NT seq
1134 nt
NT seq
+upstream
nt +downstream
nt
atgcttcaaatccgactaaccaagaccccgtcctcggacgccgccggtcccgtgaagcca
ttgcctgtggaaacggtgacggtggcttgccccgatcaccttgttatcgctgaccttccc
gttgccaagagcattggcgccgctatctcgtcctcgctcgtcaagaccgttggtcgtaag
tcacgccgccagcttggcgagcgagttcacttctgcgtccgctgcgatttccctatagcc
atctacggccgcttgagtccttgtgagcatgccttctgcctcgattgtgcaaggagtgat
tcgatttgctatctttgtgatgaacgtatacagaagattcagacaatcaagataatggag
ggantcttcatctgtgcagctcctcactgtcttaaatctttcttgaagaagactgaattt
gaatctcatatccatgagaaccatgctgcccttatacagcctaatgcagagaaggaagat
gataaagactcggaggttcagagtgctaaacaacctacaggttctgatgctgctgttcga
ggtcttccaaggtctgtcatttctcctggttcaaaccccctgctccatgatactgaagac
aaagctcgttggcagcagcccagagaacaactgccttcaaggcctataatgcagccaaag
ggaccactagtatttggtcaagttccgaattatccattggagccccaatcagatgataac
caattccaacaaggctttgacaggcctggtcctcacaaccacttccaacaaggctttgac
ctgcagggcaccccgcaaccagattctagtcagttttcagacaagctgcagggactttta
tctgagaatcagtattctgaatacccacctatgcattccatgcaaccacctaattttgct
atgccaatgaattcaaaccgaactttaactccatatggtgttcctccttttccaaccgat
ggatgtcaaccattttatggtgctccttatgaaatggctaggcaaagtaaagcgtcagat
gttggttccgagcaggggtcattgttgagtttcccaccaggtccagttgggggtgtgaat
tacccaacggcttatccgccttggaatggagggcaacctggtgtccacttttaa
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