KEGG   Gossypium hirsutum (upland cotton): 107899144
Entry
107899144         CDS       T04793                                 
Name
(RefSeq) WD repeat-containing protein 48 isoform X1
  KO
K15361  WD repeat-containing protein 48
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03460 Fanconi anemia pathway
    107899144
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107899144
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   FA (Fanconi anemia) pathway
    Other FA pathway factors
     107899144
SSDB
Motif
Pfam: WD40 DUF3337 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz WDR55 Beta-prop_TEP1_2nd EIF3I Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 Beta-prop_SCAP NBCH_WD40 Beta-prop_SPT8 Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 RAWUL Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_1st KNTC1_N Beta-prop_Nup120_160
Other DBs
NCBI-GeneID: 107899144
NCBI-ProteinID: XP_016680256
UniProt: A0A1U8IQ48
LinkDB
Position
D08:complement(65233073..65243452)
AA seq 764 aa
MHRVGSAANNGNSNRPRKEKRLTYVLSDANDTKQHCAGLNCLAVLQSSASDGCNYLFTGS
RDGTLKRWALGEDAATCSATFESHVDWVNDTVIAGGSTLVSCSSDTTLKTWNCLSDGTCT
RTLRQHSDYVTCLAAAEKNTNWVASGGLGGEVFIWDIEAAVTPLSKSSDVMEDDCSIGIN
GSANPLTISSLRTVSSNNSINASTKQCHVYVPITAKGHKESVYALAMNDSGTLLVSGGTE
KVLRVWDPRTGSKTMKLRGHIDNTRALLLDSTGRYCLSGSSDSMIRLWDLGQQRCVHSYA
VHTDSVWALASTPTFGHVYSGGRDLSLYLTDLTTRESILLCKKEHPILQLALDDDSIWVA
TTDSSVHRWPAEGQNPQKVFQRGGSFLAGNLSFSRARVSLEGTAPAPVYKEPIFTIPGTP
AIVQHEILNNRRDVLTKDTAGSVKLWDIIKGIVIEDYGQVAFDEKKEQLFEMVSIPSWFT
VDARLGSLSVHLDTPQCFSAEMYSADLNITGKSEDDKVNLGRETLKGLLAHWMTKRRQRL
GLQTPANGNVLSRKDTTPRSLAHSRIEVDGNALNDSTVYPPFELSTVSPPSIITEGSQGG
PWRKKITELDGIEDEKDFPWWVLDCVLNNQLPSRENTKCSFYLHPCEGSAVQILTQGKLS
APRILRIQKVINYVKEKMVLDKPIDNLNTIGTFAPGIGGQLQHSAVGDGSFRSGLKPRQK
LRPSVEILCNNQVLSPDMSLATVRAYIWKKPEDLVLNYRVIQGR
NT seq 2295 nt   +upstreamnt  +downstreamnt
atgcatcgagtgggcagtgcagcaaacaatggcaattctaaccgcccacgtaaggaaaag
cgactgacctatgtattgagtgatgccaatgacacaaagcagcattgtgctggcttaaat
tgtttagctgtcctacagtcatctgcctctgatggatgtaactatctcttcactggaagc
cgtgatggcacacttaagagatgggcactgggtgaagatgctgccacttgctctgccaca
tttgagtcacatgttgattgggtaaacgatactgtaatagctggtggcagtacacttgtt
tcctgctcttcagacaccacactgaagacatggaattgcttgtctgatggaacttgtacc
aggactctccgccaacactctgactatgttacatgtttagctgcagctgaaaaaaatacc
aattgggttgcttctggtggtcttggtggggaggttttcatatgggatattgaagctgcg
gttactccactttcaaagtcaagtgatgtaatggaagatgattgttccattggtatcaat
ggttctgctaatccattaacaatatcaagtttgcgaacagttagctcaaataacagcatt
aatgcaagcacaaagcagtgtcatgtatatgtccccatcactgccaaaggccacaaagag
tcggtctatgcattggcaatgaatgatagtggaacccttcttgtgtctggtggaactgag
aaggttttgcgagtttgggatccaagaactggttcaaagactatgaagctaagagggcat
atagataacaccagggctctccttctggattctactggcagatattgtttatctgggtcc
tctgattctatgatcaggctatgggatcttggtcagcaacgttgcgtgcactcttatgcg
gtgcatacagattctgtttgggcacttgcaagcaccccaacatttggtcatgtttacagt
ggtggtagagatctttctttatatttgacagacttgacaacaagagaaagtatattgctt
tgcaaaaaggaacacccaattttgcagttggcattggatgatgatagtatttgggttgca
acaacagattcttcagttcatagatggcctgctgaaggacaaaatcctcagaaggtcttt
caaagaggtggttcattcttggctggaaacttgtctttctcgagggcaagagtttcttta
gaagggacagccccagctcctgtttataaagagccaatctttactattcctggaactcca
gcaatagttcagcatgaaattttaaataacagaagggatgtattgactaaggatactgct
ggttcagtaaagctctgggatataatcaagggtattgtgatcgaggactatggacaggtc
gcgtttgatgagaaaaaggagcagttgtttgagatggtaagcatcccttcatggttcact
gtggatgcccgacttggaagcttgtctgttcatttggacacaccccaatgtttttctgca
gagatgtattctgctgatctgaatataactggcaagtctgaggatgataaggttaatcta
ggccgggaaacccttaaaggtctgttggctcattggatgaccaaaagaaggcaaagactt
ggcttgcagactccagctaatggaaatgttttatcaagaaaagatactactccaagaagt
cttgctcattcgagaattgaggttgatggaaatgctcttaatgactcgacagtctatcct
ccttttgagttgtctacagtttcccctccttcaattatcactgaaggttctcaaggaggt
ccttggagaaagaaaattactgaattggatggtattgaggatgagaaggacttcccatgg
tgggttttggattgtgtattgaataatcagctcccatcacgagagaacaccaagtgcagc
ttctaccttcatccatgtgaaggttcagctgttcagatcctcacacaggggaagttgagt
gcaccgcgtatattgagaatacaaaaggttattaattatgtcaaagaaaagatggtgctt
gacaaaccaattgataatttaaatactattggaacatttgctcctggaattggaggacaa
ttgcagcattcggcagttggagatggatcttttcggtctggattgaagccaaggcaaaag
cttcggccttctgttgagattttatgcaataatcaggtattatctcctgatatgagctta
gctactgtgcgggcttacatatggaagaaacccgaggatttggtacttaattatagagtt
attcaaggcaggtga

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