Gossypium hirsutum (upland cotton): 107899406
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Entry
107899406 CDS
T04793
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH1 isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107899406
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107899406
03012 Translation factors [BR:
ghi03012
]
107899406
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107899406
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107899406
Translation factors [BR:
ghi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107899406
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_C
DEAD
HA2_N
AAA_22
nSTAND3
T2SSE
SRP_TPR_like
AAA_19
Rad17
ATPase
Motif
Other DBs
NCBI-GeneID:
107899406
NCBI-ProteinID:
XP_016680599
UniProt:
A0A1U8IXE8
LinkDB
All DBs
Position
D04:32178225..32186635
Genome browser
AA seq
1034 aa
AA seq
DB search
MSLRLLSINKKLTSVLFNRPFPAPTLIFPFSPLQISSFAMSYRPNYQGGRRGGGPNSGRG
GGCRGGDGGGRGGRGGEQRWWDPVWRAERLRQKAAEMEVLDEAEWWYKMNQMKKGQEQEM
IIKRNFSRSDQQVLSDMAYELGLYFHAYNKGKALVVSKVPLPNYRADLDEHHGSTQKQIQ
MSTETERRVGNLLDVSRDTKSGDDSGVASSRGATKPLPDVKRIDSDSTIETDSSKEKFSA
ELKKKQENLNASNSVKAMLSFREKLPAFKGKAEFLKAVAQNQVLVVSGETGCGKTTQLPQ
FILEEEISSLRGANCNIICTQPRRISAISVAARISSERGENVGETVGYQIRLESKRSAQT
RLLFCTTGVLLRQLVQDPYLNGVSHLLVDEIHERGMNEDFLLIILRDLLPRRPDLRLILM
SATINADLFSKYFGNAPTIHIPGLTFPVAELFLEDVLQKTRYNIKSEFDNYQGNSRRRRK
VLDFKKDNLTALFEDVDIDSEYKNYSASTRHSLEAWSGSQIDLGLVEATLEHICRHEADG
AILVFLTGWDDISKVLDKIKVNSFLGDLSKFLVLPLHGSMPTINQREIFDCPPPNKRKIV
LATNIAESSITIDDVVYVIDCGKAKETSYDALNKLACLLPSWISKASAHQRRGRAGRVQP
GVCYRLYPKLIHDAMLEYQLPEILRTPLQELCLHIKSLQLGSVGSFLAKALQPPDPLSVE
NAIELLKTIGALGDAEELTPLGRHLCTLPLDPNIGKMLLMGAIFQCLNPALTIAAALAHR
DPFVLPINRKEEADAAKRSFAGVSCSDHIALVKAFEGYKDAKRNGRERAFCWENFLSPVT
LQMMEDMRNQFIDLLSDIGFVDKSPGASAYNQYSHDLEMVCAVLCAGLYPNVVQCKRRGK
RTAFYTKEVGKVDIHPASVNAGVHLFPLPYMVYSEKVKTTSIFVRDSTNISDYALLLFGG
NLIPSKTGEGIEMLGGYLHFSASKSVLDLIRKLRGELDKLLNRKVEEPGFDISVEGKGVV
SAVVELLHSQNVRY
NT seq
3105 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgcgcttgcttagcattaataaaaagctcacttcggttcttttcaatcgcccc
ttccccgcccctacgctgatctttcctttttctccactccagatttcatctttcgctatg
tcttatcgccctaactaccaaggtggccgtcgaggcgggggtcccaactccggccgcgga
ggtggatgccgaggaggcgacggcggaggacgcggaggacgaggcggtgaacagcgctgg
tgggacccggtttggcgcgctgagcgcctccgtcaaaaggccgctgagatggaagttctg
gatgaggctgagtggtggtataagatgaatcaaatgaaaaaaggacaggagcaagagatg
atcattaaacgaaatttcagccgttccgaccagcaagttctctctgatatggcttacgaa
ttaggtctttactttcatgcgtataataaagggaaggctcttgtggttagtaaagttcca
ttgccaaattatcgtgcagatcttgatgaacatcatggatcaacacaaaaacagattcaa
atgtctacagaaactgagaggcgagtgggaaatctcttggatgtctcaagggacacaaag
tcgggtgatgattcaggagtggcatctagtaggggagccacaaaaccattgcctgatgta
aaaagaattgattcagattctacaattgaaacagattcttccaaggaaaaattcagtgct
gaactcaagaaaaagcaggaaaacttgaacgcaagtaacagtgtgaaggcgatgctgtct
ttcagagaaaaactaccagcattcaaagggaaagctgagtttctgaaagctgttgctcaa
aatcaggttctagtggtttcaggagaaacaggttgtggtaaaacaacacagcttcctcaa
tttattttagaagaggagatatcatctctgaggggtgctaattgtaacataatatgtact
cagccacgtcgcatatctgcgatatctgttgcagccagaatatcctcagaaaggggagag
aatgttggtgaaactgttggttatcagattcgcctggagtcaaagcgatctgctcagaca
cggctgttgttttgcacaactggagtgttactcagacagttggttcaggacccatattta
aatggtgtgagtcatttgctagtggatgaaattcatgaaagaggcatgaatgaggacttc
ctgttaataattttacgtgaccttcttcctcggcgtccagacttgcgtcttattttgatg
agtgcaaccatcaatgctgatttgttctctaaatattttggaaatgctccaactattcac
ataccggggttgacctttccagtggctgagttatttctcgaggatgtgctgcagaaaact
cgttataatatcaaatcagaatttgacaattatcaaggcaattcacgaaggaggaggaaa
gtgcttgatttcaagaaagataatttaactgcactatttgaggatgttgacattgattct
gaatataagaattacagtgcatctacaagacattcacttgaagcatggtcaggttcacag
attgatttgggtctggtggaggccacacttgagcatatttgccgccatgaagctgatgga
gctattcttgtattcctcacaggctgggatgacatttctaaggtccttgacaagattaaa
gtgaacagctttcttggggatcttagcaagtttctggttcttcccttacatggttctatg
cctaccattaatcaacgagaaatatttgactgtcctccacctaacaagcgaaaaattgtt
ttggcgacaaatattgctgaaagtagcatcaccatagatgatgttgtgtatgttatagac
tgtggaaaggcaaaggaaacaagttatgatgctcttaacaagctggcatgtcttttacct
tcatggatttcaaaggcttcagcacatcagagacgaggccgtgctggtcgtgtgcaacct
ggagtttgctataggctgtacccaaaattgatccatgatgcaatgcttgagtatcaatta
cctgaaattctccgaacaccattgcaagagctatgtctacatatcaaaagcttgcagctt
ggatctgtgggatcatttttggcaaaggcacttcagcctccagatcctctttctgttgaa
aatgcaattgagcttcttaaaacaattggagctttgggtgatgcagaggagcttactcct
cttggtcgtcatctttgcactctacctttggacccaaatataggaaagatgcttctaatg
ggggctatttttcaatgcctgaatcctgctttgacaattgcagctgctcttgctcatcgc
gacccatttgtccttccaataaataggaaagaggaagctgatgcagcaaaaagatccttt
gctggtgtttcttgcagtgaccatatagcacttgttaaagcttttgaaggatataaagat
gcaaagcgtaatggaagagagagagcattttgttgggaaaattttctatccccagtgacc
ttgcagatgatggaggatatgagaaatcagtttatagatctgttatcagacataggcttt
gtagacaaatcaccgggtgctagcgcttacaaccaatacagccatgatttggagatggta
tgtgcagtcctttgtgctgggctttacccaaatgttgtgcaatgcaaaagaagaggaaaa
cgtacagcattctacactaaagaagtcggaaaagttgacattcatcctgcatctgttaac
gcgggggttcatctctttccattgccttatatggtttacagtgaaaaggtcaaaacaacc
agcatttttgtccgagactcaacaaatatttctgattacgctttacttctgtttggtggt
aatcttattcctagcaaaacgggagagggtattgagatgcttggggggtaccttcatttt
tctgcgtcgaagagtgtactggacttgatacggaaactgcgtggggaacttgacaagctt
ttgaacagaaaggttgaagaacctggatttgatatatctgttgaaggaaagggagtagtg
tctgctgtggttgagttattgcacagccaaaatgtacggtactga
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integrated database retrieval system
