Gossypium hirsutum (upland cotton): 107899473
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Entry
107899473 CDS
T04793
Name
(RefSeq) cell division cycle protein 48 homolog
KO
K13525
transitional endoplasmic reticulum ATPase
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
107899473
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107899473
03009 Ribosome biogenesis [BR:
ghi03009
]
107899473
04131 Membrane trafficking [BR:
ghi04131
]
107899473
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ghi04147
]
107899473
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Ran-mediated transport factors
107899473
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
107899473
Membrane trafficking [BR:
ghi04131
]
SNARE
SNARE associated proteins
Others
107899473
Autophagy
Aggrephagy
Other aggrephagy associated proteins
107899473
Exosome [BR:
ghi04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
107899473
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA
AAA_lid_3
CDC48_N
RuvB_N
AAA_16
CDC48_2
AAA_2
AAA_5
AAA_22
AAA_33
AAA_14
TIP49
NPHP3_N
RNA_helicase
AAA_17
nSTAND3
AAA_28
Mg_chelatase
ATPase_2
AAA_18
Parvo_NS1
IstB_IS21
Viral_helicase1
ABC_tran
NACHT
AAA_lid_PRS2_C
AAA_7
NB-ARC
AAA_24
TsaE
DUF815
Zeta_toxin
Sigma54_activat
Vps4_C
Sigma54_activ_2
Zot
Phage_Mu_Gp48
Motif
Other DBs
NCBI-GeneID:
107899473
NCBI-ProteinID:
XP_016680681
UniProt:
A0A1U8IRF7
LinkDB
All DBs
Position
D04:41476367..41481009
Genome browser
AA seq
805 aa
AA seq
DB search
MSNQAESSDSKGAKKDFSTAILERKKAANRLVVDEAINDDNSVVSLHPDTMEKLQLFRGD
TILIKGKKRKDTICIALADDTCDEPKIRMNKVVRSNLRVRLGDVVSVHQCPDVKYGKRVH
ILPVDDTIEGVTGNLFDAYLKPYFLEAYRPVRKGDLFLVRGGMRSVEFKVIETDPPEYCV
VAPDTEIFCEGEPVKREDENRLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIGVK
PPKGILLYGPPGSGKTLIARAVANETGAFFFCINGPEIMSKLAGESESNLRKAFEEAEKN
APSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKSRAHVIVIGATNRPNSIDPA
LRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLERISKETHGYVGADLAALCT
EAALQCIREKMDVIDLEDETIDAEILNSMAVSNEHFQTALGTSNPSALRETVVEVPNVSW
EDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANECQ
ANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAGGA
ADRVLNQLLTEMDGMSAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDEDSRHQI
FKACLRKSPIAKEVDLRALARYTQGFSGADITEICQRACKYAIRENIEKDIERERRRSEN
PEAMEEDVEDEVAEIKPAHFEESMKFARRSVSDADIRKYQAFAQTLQQSRGFGSEFRFAE
TGSRTAASDPFAAAAGGADEDDLYS
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgtctaaccaagctgaatcctctgactcgaagggggctaagaaggattttagtacggcg
atcttggaaagaaagaaggcagcaaatcgactcgttgttgatgaggcaatcaacgatgat
aactctgttgtttctcttcatcctgataccatggaaaagctccagctgtttcgcggtgac
actattctcatcaagggaaagaagaggaaagatactatctgcattgctctggcagatgac
acatgtgatgaacctaagatcaggatgaataaggttgttaggtcaaacttgagagttagg
cttggtgatgttgtctctgtgcatcagtgtccagatgttaagtatggaaaacgtgtgcac
atcttgcctgtggatgacacaattgaaggggttactggaaatctctttgatgcttacctg
aaaccttactttctggaagcataccgcccagtgaggaagggtgatctcttccttgtgaga
gggggaatgagaagtgtagaattcaaggttattgagactgaccctccagagtattgtgtg
gtcgcaccagacactgagatattctgtgaaggagagcctgttaagagggaggatgagaat
agattagatgaggtgggttatgatgatgttggcggagtgagaaaacagatggctcagatt
cgggaactagtggagcttccattgaggcatccacagttatttaaatcaattggcgtgaag
ccacctaaaggaatcttgctttatggacctcctggatctggaaagactttgattgcccgt
gcagttgcaaatgaaactggtgctttctttttttgcatcaacggtcctgagatcatgtca
aaattggccggggagagtgaaagcaatcttagaaaagcttttgaggaagcagagaagaat
gcaccatctattatattcattgatgaaattgattcaattgctccaaagagagagaagaca
catggtgaagttgagaggagaattgtctctcagctgttgacattgatggatggtcttaaa
tcccgtgcacatgttattgttattggggccacaaatcgtcccaatagcattgatcctgct
cttagaaggtttggaagatttgatagggagattgatattggtgtccctgatgaagttggc
cgtcttgaggtgctccgtatccacaccaagaacatgaagctggctgaagatgttgattta
gaaagaatttccaaggagacacatggctatgttggtgctgatctcgcagctctctgtact
gaggcagcattacagtgcatcagggaaaagatggatgtgattgacttggaagatgagaca
atagatgctgagatactcaactctatggcagtctcaaatgagcacttccagactgctctt
ggaacaagcaatccatcagccctgcgtgaaactgttgttgaagtacctaatgtcagttgg
gaagatattggaggcctcgagaatgttaaaagggagcttcaagagactgttcaatatcct
gtggagcatcctgaaaagtttgagaagttcgggatgtcaccctcaaagggagtactattc
tatggccctccaggatgtgggaaaacccttctggccaaagctattgccaatgagtgtcag
gcaaacttcatcagtgtcaagggtccagaattactaacaatgtggttcggagagagtgag
gccaatgtgcgggaaatttttgacaaggctcgccagtctgctccttgtgtactgttcttt
gatgaacttgattcaattgctacccagagaggaagcagcgtgggtgatgcagggggtgct
gctgatagggttttgaaccaacttcttactgagatggatggcatgtctgccaagaaaact
gttttcatcattggagccaccaaccgacctgatattatagatccagcacttctgcgtcca
ggtcgtcttgatcagttgatctatattcctctccctgacgaggattctcgccatcagatt
tttaaggcttgcttgaggaaatcaccaattgcaaaagaggttgacctcagagctcttgcc
agatatactcaagggtttagtggggctgatatcacagaaatttgccaacgagcatgtaaa
tatgccataagagaaaacattgaaaaggatattgagagagaaaggagaagaagtgagaac
cctgaagctatggaggaagatgttgaggatgaagtggcagaaatcaagcctgcacatttt
gaggaatcaatgaagtttgctcgtaggagtgtgagcgatgctgacatccgcaaatatcaa
gcatttgctcaaacattgcagcagtcgaggggatttggaagtgaatttaggttcgctgaa
actggttccaggactgcagcctctgatccttttgctgctgctgctggaggagctgatgaa
gatgacctttacagttaa
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integrated database retrieval system
