Gossypium hirsutum (upland cotton): 107899509
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Entry
107899509 CDS
T04793
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 38-like
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107899509
03015 mRNA surveillance pathway
107899509
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107899509
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107899509
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107899509
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
Motif
Other DBs
NCBI-GeneID:
107899509
NCBI-ProteinID:
NP_001313804
UniProt:
D6N3H0
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All DBs
Position
D04:39733540..39737670
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AA seq
501 aa
AA seq
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MAETASNSAPSTTTTAEAPAPQETKKTTEAPVRWADLEDEASEEPSALSEDKGAPELGVE
NLKIDESKKINKFLDEPEDSNIKAVTAGETPYTSAFTFEELNLSPELLKGLYVEMKFEKP
SKIQAISLPMILTPPHLDLIAQAHNGSGKTTCFTLGMLSRVDPNLKAPQALCICPTRELA
IQNLEVLRKMGKHTGITSECAIPMDSSNYIPINKRAPIIAQVVIGTPGTIKKWMSAKKLG
VSNVKVLVFDEADHMLAEDGFKDDSLRIMRDIEKMSSHCQVLLFSATFSDTVKNFVSKIV
KRDHNQLFVKKEELSLESVKQYKVNVPDELSKVLVIKDRILEFGERLGQTIIFVRTRNSA
SMLHKALVEFGYDVTTIQGALNQAERDKIVKEFKDGLTQVLISTDLLARGFDQQQVNLVI
NYDLPVKHDNRVEPDCEVYLHRIGRAGRFGRKGAVFNLLCGDMDQMIISKIENHFDSKIA
EVPDWRNEEDFKAALRSAGLL
NT seq
1506 nt
NT seq
+upstream
nt +downstream
nt
atggctgaaaccgcctctaactccgccccttccaccactaccaccgccgaggcgccagcg
cctcaagaaaccaaaaagaccaccgaggcaccagtaagatgggccgatttggaagacgaa
gcttcggaagaaccgagtgctttatcggaagacaaaggtgcgccggaactcggagttgaa
aacctaaaaatcgatgagagcaaaaagatcaacaagttcctcgacgaacccgaggactcc
aacatcaaagccgtcacagctggggagacaccatacacttcagcatttacgtttgaggaa
ttgaatctgtcccctgaattgttaaaagggctatatgttgagatgaaatttgaaaagcct
agcaaaatccaagctattagtttaccgatgattttgacgcctcctcacttggatttaatt
gctcaagctcacaatggttctggtaaaaccacttgctttactcttggaatgctgtctcgt
gttgatccgaatctaaaagctcctcaagcactttgcatttgtcctactagagaactggct
attcagaatttggaagtgcttaggaagatggggaagcatactgggataacatcagaatgt
gctattccaatggatagttccaattatattccaattaataaacgggcacccattatcgct
caagtagttattggtactcctggcactattaagaagtggatgtcagcaaagaaattgggt
gtgagtaatgtgaaggttcttgtgtttgatgaagctgatcacatgctggctgaggatggg
tttaaagatgactccttgagaataatgagggatattgaaaagatgagttctcactgccag
gttcttctgttttctgccacatttagcgacactgtgaagaattttgtctcaaagatagtc
aagagagatcacaatcaactttttgtcaagaaggaagaactatctttggagtctgtgaag
caatacaaggtgaatgttccagatgaactttccaaagttttggtgattaaagatagaatt
ttagaatttggagagcgcctagggcagactataatatttgtacgcacaaggaatagcgca
agcatgttgcataaagcacttgttgagtttggttatgatgttaccacaattcaaggtgct
ctcaatcaagctgaacgagacaagatagtcaaagaatttaaagatggtttgactcaagtg
ctcatttcaacggacctccttgcccggggttttgaccaacaacaggttaatttggtcatc
aactatgatcttcctgtaaaacacgacaaccgtgtggagcctgattgtgaggtttacttg
catagaattggcagagcaggacgttttggccgcaagggagccgtgttcaacttactctgt
ggtgatatggaccaaatgataatatccaaaatcgaaaatcattttgacagcaaaatagca
gaggttcctgactggaggaatgaggaagactttaaagctgctctccgatcagccggttta
ttatga
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