Gossypium hirsutum (upland cotton): 107899510
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Entry
107899510 CDS
T04793
Name
(RefSeq) polyadenylate-binding protein 7
KO
K13126
polyadenylate-binding protein
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107899510
09123 Folding, sorting and degradation
03018 RNA degradation
107899510
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107899510
03041 Spliceosome [BR:
ghi03041
]
107899510
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107899510
mRNA cycle factors
Stress granule specific factors
107899510
Spliceosome [BR:
ghi03041
]
Complex C
Other components
Complex C specific factors
107899510
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RBD_DEAH11
RRM_occluded
RRM_7
RRM_3
RRM_RdRP1_2
Nup35_RRM_2
GNAT_acetyltran
HOATZ-like
Motif
Other DBs
NCBI-GeneID:
107899510
NCBI-ProteinID:
XP_016680732
UniProt:
A0A1U8IRK5
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All DBs
Position
D04:complement(39704161..39707877)
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AA seq
640 aa
AA seq
DB search
MAVPSAATVTASPVSLYVGDLHPDVSDANLIETFSEFKSLASVHVCRDSSTGRSLCYGYV
NFISPQDAHHAIEAKNHTLLNGKMIRVMWSLRDPDARKNGVGNVFVKNLSDSIDNVGLQE
LFRKFGNVISCKVATFEDGKSKGYGFVQFESEESASAAIEKLNDTIFGDKQIYVGKFMKK
SDRVLPSPDVKYTNLYVKDLDPEITEETLQEKFSEFGKIASLVVAKDEHGASRGFGFVNF
ENPDDAKKAMEVMNGSQLGSKVIYVARAQKKAEREQILRQQFEERRKEQIMKYKASNVYV
KNIDDEVTDEELREHFSQCGTITSAKLMRDNKGLSKGFGFVCFSSPEEAAKAVSTFHGYM
FHNKPLYVAIAQRKEDRQAHLQLQYAQRMAGLAGPSTAIFPGGYHPLYYTAPTGVVPQVP
PRPGMMYQPLGLRPGWRANGFVPPTRPAFQPSSLPMVPSNPRQTRQNRGRMNGHALPQGG
SHSVTYVPQLQQPTQTIIPSKDQSNLQRGGQAKYVPNGRAREVNKGSRVPPAASNSVAAV
SQGSEVLSSMLAAASPEQQKTILGERLYPLVQKHQPDLVPKITGMLLEMDNAELLLLLES
PESLAAKVEEAVEVLKLSNAKVSGQDVLHPSFLSAEVAVN
NT seq
1923 nt
NT seq
+upstream
nt +downstream
nt
atggcggttccatcggcggcaacggtgacggcttcgccggtctcattgtacgttggggac
ttgcaccctgacgtctctgacgctaatcttatcgaaactttctctgagttcaagagcttg
gcctctgttcatgtttgtagggattcttctaccggaagatctctctgttatggctatgtc
aacttcatctctcctcaggatgcacatcatgctattgaggcaaagaatcataccttgctg
aatgggaaaatgataagggtgatgtggtcacttcgagatcctgatgcaagaaaaaatgga
gttggaaatgtgtttgttaagaatctcagtgattcaattgataatgtgggactgcaagag
ttattccgcaagtttgggaatgtaatatcttgcaaagttgcaacgtttgaggatgggaag
agtaaaggttatggctttgttcagtttgagtcagaggaatctgcaagtgctgctattgag
aagcttaatgacaccatttttggggataagcagatatatgttgggaaatttatgaaaaag
agtgatcgggttttgccaagtcctgatgtcaaatatacaaatttgtacgttaaggatttg
gatccagaaatcacagaagagactttgcaagagaagttttccgagttcgggaaaatcgct
agcctggttgtagcaaaggatgaacatggagcctctagaggttttggctttgtgaacttt
gaaaatccagatgatgctaagaaggcaatggaagtgatgaatggatcacaactaggctca
aaggttatatatgtagcaagggcacagaagaaagcagaacgggagcaaatattgcgtcaa
caattcgaggaaagacgaaaagagcagatcatgaaatataaagcttcgaatgtttatgtg
aagaatattgatgatgaagtcaccgatgaagaactgagagaacattttagtcagtgtgga
acaatcacttctgcaaaacttatgcgagataataaaggattaagcaaggggttcggattt
gtttgtttttcttctcctgaggaggctgccaaagctgtgagcacatttcatggctacatg
tttcacaacaagccattgtatgttgctatcgctcaaaggaaggaggatagacaagcacac
ttacaacttcagtatgcgcagcgtatggccggactagcagggccttctacagctattttc
cctggaggatatcacccactttactacacagctccaaccggcgtcgttccacaagtacct
ccacggccaggaatgatgtaccaacctttaggtttgaggccaggatggagggctaacggc
tttgtacccccaaccagaccagcctttcaaccatcatcgttgcccatggttcctagtaat
ccaaggcaaactagacaaaaccggggtcgtatgaacgggcatgctcttccacagggtggt
tctcactctgtcacatatgtaccacaactgcaacaaccaactcagacaatcattccttca
aaggatcaaagtaacttacagcggggtgggcaagctaaatatgtaccaaatggtcgtgca
cgagaggtgaacaaaggatctagagtcccaccagcggcttccaattctgttgcagctgta
tcacaaggatctgaggtgctgagtagcatgcttgctgcagcttcccccgagcagcaaaaa
acgatactcggcgaacgattgtacccccttgttcagaaacaccagcctgatctggttccg
aaaatcacagggatgctgttagagatggacaatgcagaactgctgctgctattagagtca
ccagaatctctggctgccaaagtggaggaagctgtggaggttctgaagctgtcaaatgca
aaagtatctggacaagatgttcttcatcccagtttcctgtctgctgaagttgctgtcaac
tga
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