Gossypium hirsutum (upland cotton): 107899592
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Entry
107899592 CDS
T04793
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 2 homolog B isoform X1
KO
K08775
breast cancer 2 susceptibility protein
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03440
Homologous recombination
ghi03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107899592
03460 Fanconi anemia pathway
107899592
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107899592
03036 Chromosome and associated proteins [BR:
ghi03036
]
107899592
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107899592
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
107899592
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
107899592
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
107899592
FA (Fanconi anemia) pathway
Downstream FA components
107899592
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_OB1
BRCA2
BRCA-2_helical
Tower
Motif
Other DBs
NCBI-GeneID:
107899592
NCBI-ProteinID:
XP_016680837
UniProt:
A0A1U8IRW1
LinkDB
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Position
D04:complement(49321578..49328552)
Genome browser
AA seq
1106 aa
AA seq
DB search
MSTWQIFSHAGTSFRWEASPPILPTKPADDPNGAPVPPLPSMADLLLQGCSKLIENGDGE
FEKYPMFRTGLGKSVALKESSIAKALSILANDDAASTVTSSKLIPANNGCGSSLFQTGSG
KMVNISSAGLVRAKTLLGLEHDNENHNFEGFQHPRRLPATNEPYDCQRFSHSGKKEDLQN
YGVMDVTSEPRHMLNSRNGLVGGELGSENDSTPMHSKMFDSAPKPPPIKFHTAGGRSLSV
SSDALKRARSLLGDPELGNIFGEMDQEVPPFTVYKEENFNDASLNKENCFFTSFPVSKDT
SKDFTSPLKSSFKQTRSIFNSENLRFGSNLIEKFDAVESSSACASAINMPSPQNALNSIN
RLSEKNFATNNSLPSGSGSQTNLPRRSFGGPLADISNNIATSQTNNKQVMNEKRRIGRSS
FVSPFKRPRCSKISAPWNNDVSLVANDDHTCCNRTVSTKYPFRVPRVYIKEYFAVPPSAC
STLKCFPINGKQITPENAYEYLFKDETGFSRIGAEAFYDMLSHSGASVQHVSKEWVANHY
KWIVWKLACYERCYPSKCAGKFLTVSNVLEELKYRYEREVNHGQRSAIKKILEGDASPSK
MLVLCVSTIQSNSEPNMETNLEITNGTHYSGNAKVELTDGWYSINAVLDVLLSKQLAVGK
LFVGQKLRIWGAGLCGWDGPVSPLEASSAISLALNMNGTFRAHWADRLGFCKGFRIPMAF
RCIKGDGGPVPLTLVGVTRIYPVLYKERLRNGGSIVRSERMESRMVQKHNQRCSVLVDHV
ISEYQRGVNSSYIHNDSESEGAKILRILETSAEPEVLMAEMSPEQLTSFATYKSKLEATR
QLEMEKSIEKALAEAGLNERDVVPFMRVRVVGLINRNYHGKGRPKEGIITIWNPTEKQES
ELVEGQAYVVSGLIPMNSDSEILYLQARGSTNKWQPLSPLAMESFEAFFFPRKSMKLSNL
GEISLSSEFDIAAYVVYVGEVYTASHLKKQWVFVTDDSISDLQSDSLLAISFCSPSIDDD
SFAPINSNLVGSMVGFCNLIKKPKDQMNHLWVAEATENSTYYLNFKPSISHLKSAGASVQ
AWAKASSSIIDELRKKVLFVIGNCEG
NT seq
3321 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgtggcagattttttctcatgccggaacaagttttcgctgggaggcttcccct
cctatcctaccgactaagcctgccgatgacccgaacggagctccggttcctccactccca
tccatggccgatctcctgcttcaaggatgttcgaagcttattgagaatggagatggagaa
ttcgagaaatatccgatgttcagaaccggattggggaaatcggtggcgttgaaagaatct
tcaattgcaaaagcattatctatcctcgccaacgacgacgctgcctctactgttacttca
agcaagctgattccagcgaacaatggctgcggtagctctctttttcaaacaggctctggg
aaaatggttaacatatcttcagctggtctggtcagagctaagacattgttgggacttgaa
cacgataatgagaatcacaattttgaaggttttcaacatccaaggaggttacctgcaact
aatgaaccttatgactgccaaaggttttctcattcagggaagaaagaagatttgcaaaat
tatggggttatggatgttacatcagaaccaaggcacatgttaaactctaggaatggttta
gtaggaggtgaactaggcagtgaaaatgactcaactccaatgcattccaaaatgtttgat
tcagctcccaagccacctccaatcaagtttcatactgcaggtggaagatcattgtcagtt
tcaagtgatgcattgaagcgtgcaaggagtcttcttggtgacccagagctaggaaatatc
ttcggtgaaatggatcaagaggttccaccatttacagtttacaaggaggaaaattttaat
gatgcttcattaaacaaggaaaactgtttctttacttcatttcctgtaagtaaagacaca
tccaaggatttcacatccccactgaaatcatctttcaagcaaacaaggtccatattcaat
tcagaaaatttaaggtttgggagtaatttgattgaaaaatttgatgcagttgaaagttct
agtgcatgtgcatcggccattaatatgccttctccacagaatgctttgaattcaatcaat
aggctttctgagaaaaattttgcaactaacaattctttgcctagcggttctggttcacag
actaatttgcctagaaggtcatttggtgggccattggctgatatttcaaataacattgct
acatctcaaacaaataacaaacaggttatgaatgaaaagaggagaattggaagatcaagt
tttgtttctcccttcaaaagaccccgctgttccaagatctctgctccatggaataatgat
gtttccttggtagcaaatgatgatcatacatgttgcaataggacagtttccactaaatat
ccttttcgagtaccaagagtatatataaaggaatattttgctgtgcctccttcagcctgc
agcacgttgaagtgtttcccaatcaacggtaaacagatcactccagagaatgcttatgag
tatttatttaaagatgaaactggcttcagtcgaattggggcagaagctttttatgacatg
ttgtctcattctggagcttctgtgcaacacgtttctaaagagtgggtcgcaaatcattat
aagtggattgtttggaaacttgcatgctacgagaggtgctatccttccaaatgtgctgga
aaatttttaacggtctccaatgtacttgaggaattaaagtacagatatgagagggaagtc
aatcatggtcagcgttctgcaataaagaaaatacttgaaggggatgcttcgccttctaaa
atgttggtgctatgtgtttcaacaattcaatcaaattctgaaccaaatatggagaccaac
ctagagataacaaatggaactcattatagtggcaatgcaaaagtggaactaacagatggg
tggtactctataaatgctgttttggatgtattgctatcaaagcagcttgctgttggaaaa
ttgtttgtgggacagaagcttcggatatggggagcaggactttgtggctgggatgggcca
gtttcaccccttgaggcgtccagtgcaattagtttagctttgaacatgaacgggacgttt
agagctcactgggctgatcgacttggattttgtaaaggttttcgtattcctatggcattt
aggtgtatcaagggtgacgggggtccagtccctttgactttagttggagtcactcggata
taccctgttctctacaaggagaggttgagaaatgggggatcaattgttagatctgagagg
atggagagtagaatggtgcaaaagcacaatcaaaggtgctcagttctggttgatcatgtt
atatctgagtaccaaagaggggtcaacagttcttatatccataatgacagtgagagtgaa
ggagcaaaaatcttaaggattcttgagacatctgctgagccagaagtccttatggcagaa
atgagcccggagcaactaacttcctttgctacatataaatcaaaacttgaggctactagg
cagttagagatggagaaatcaattgagaaagctctggcggaggctggattaaatgagcga
gatgttgttccattcatgagggttagagttgttggattaattaataggaattatcatgga
aagggaagacctaaagaaggaataataaccatttggaatccaacagaaaagcaggaaagt
gagctggttgagggacaggcatatgtcgtttctggacttataccaatgaactcagattcg
gaaatcctttacttacaagcccgaggatctaccaacaaatggcagcccctatctcccctg
gcaatggaaagttttgaggcatttttcttcccacggaagtcgatgaagttgtcaaattta
ggtgaaatttctctttccagtgagtttgacattgctgcatatgttgtgtatgtgggagaa
gtctatacagcttctcatctgaagaaacagtgggtgtttgtgacagatgattctatttcc
gatttacagtcagattctttacttgccatcagtttttgctcaccatccattgatgatgac
tcgtttgcaccaatcaactctaacttagtgggatccatggtaggcttctgtaaccttatt
aagaaaccaaaggatcaaatgaatcatctctgggttgctgaagcaacagaaaattctaca
tattatttaaattttaaaccctcaatttctcacctcaaaagtgccggcgcttctgttcag
gcatgggcaaaggcctctagctcgattattgacgaactccgcaagaaggttttatttgta
attggcaattgtgaaggctag
DBGET
integrated database retrieval system
