Gossypium hirsutum (upland cotton): 107899676
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Entry
107899676 CDS
T04793
Name
(RefSeq) E3 ubiquitin-protein ligase UPL4 isoform X1
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
107899676
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107899676
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
107899676
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
HECT type E3
107899676
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
Arm
Motif
Other DBs
NCBI-GeneID:
107899676
NCBI-ProteinID:
XP_016680936
UniProt:
A0A1U8IS66
LinkDB
All DBs
Position
D04:complement(43133175..43141209)
Genome browser
AA seq
1570 aa
AA seq
DB search
MGSRGQKRTETADELPADKRACSSLEFRPSSSNCSSIRTHLNSPNSTPDADMETSSSTSA
SSRSDGEHEKEDESAYGSCDSDDAEQQPRHHILRDYQRRRSSSDHGKLNTILSNLNEGNG
GSGQLAALTELCEVLSFCNEDSLSSLMADSLSPVLVKLAKNESNANIMLLAIRGMTYLCD
VYPRSSGFLVRHDAVPALCERLLAIEYVDVAEQCLQALEKISRDQPVACLQAGAIMAALN
FIDFFSISVQRVALATVVNICKKLPLEGPAPFVEVVPKLCDLLQHEDQQLVESVATCLIK
ISERMCQSSELMEELCKHELINQVTLVMKSNSRTTISQPIYNGLIGLLVKLSSGSFVAFR
SLYELNISNILKDVLSTYDLSHGISPPDLVDGNCNQVHEVLKLLNELLPASTGDQANQVV
LDKESFLADHHDLLQRFGMDLFPVLVQVVNSGANIYVCYGCLSVISKLVVLSKPDMLGEL
LKTANIPSFLAGVFTRKDHHLLMLALQIAEIILKKLSDVFLSSFIKEGVFYVIDALLMPE
KCSQLMLPVFGGIQPSFDSSQKSSAREFQRCLCYAFDMVPSSSVSSCKIDKDTVCNLAKH
IKTNYFAPELVESDKGMTDVLQNLRTLSAALSSLINMPVDDGTTVQHEEKFYSILHQIML
KLNGREPVSTFEFIESGIVKSLMHYLSDGMHMRGNVEFTGSYDHLVVLGKRFEVFTKLFF
SYSDILVEDLPLSILIQKLQSGLSTLENFPVIPSHGFKQRNSFATVPNGRCVMYPCFRVR
FVRAEGENCLSDCAEDVLAVDPFSPLDAIEGYLWPKVFTERTEYGELDAEELEQREVLPN
LLPSNANSTQAKSSGFIDSMSIDLPEMQEDEANFSQIASEQVHFRELNSGETMSLDETNM
GSAGKEQEFPTESTKNMRTPCSASGDNDIKDSSARLLLYLEGHQLDRTLMLYQVILQQLL
NSEKEFMTWAKLWSRVYTITYKRALESNQDDPQEHTYQERKFSVSDQKIASIQNMGYFSS
MFACKLTSDLDKSSPIYDILFLLKLLEGINKYSFHLMSCERVRAFAEGRNDNLDNLKVMV
RSVSQNEFVSSRLTGKLEQQMQDAFTLSTGGMPLWCNDLVSSCPFMFSFEARCKYFRLAA
FGPRRGQLNAISRSNSGTSSDRQTTSGGLPRKKFLVSRDQILDSATRMMDLLARHKGLLE
VEYNEEVGTGLGPTLEFYTLVSHEFQKFGLGMWRGDHCSFITSTTLPTESVILRNSSGLF
PRPCSPKSDANNGIQFSQVLKKFVLLGQIVAKAIQDGRVLDVSFSKAFYKLILGQDLSLY
DIQSFDPELGRTLLEFQAIIVNQKRLQESICVENAALKQDLCFRNTRIEDLYLDFTLPGY
PDYVLSSECNLKMVNSANLEEYVELVVDATIHSGIARQVEAFKSGFNQIFSISHLHIFTE
EELERLLCGECDIWAFNELLEHIKFDHGYTASSPPIVNLLEIIQEFEYSQRRAFLQFVTG
APRLPPGGLASLIPKLTIVRKHSSNCADTELPSVMTCANYLKLPPYSSKEKMKEKLLYAI
SEGQGSFHLS
NT seq
4713 nt
NT seq
+upstream
nt +downstream
nt
atgggaagtcgagggcagaaacgaacggaaacagccgacgaattaccagcagataagcga
gcttgtagttcattagagtttcgaccaagttcctctaactgttcctcaatcagaactcac
ctcaattcaccaaattccactcccgatgctgacatggaaacttcctcctccacctcggct
tcgagccgatcggatggtgaacacgagaaggaagacgaatcagcttatggatcatgcgat
tctgacgatgctgagcaacaaccacggcaccacattttaagagactatcagagaagaaga
tcgtcgagtgatcatggaaaattgaatactattttgtcaaatttgaacgaaggaaatgga
ggttcgggccaactggctgcgttgactgaactttgtgaagtgttgtctttttgtaacgag
gattcgctttcgagtttgatggcagattctttatcaccagtacttgtaaagcttgcgaag
aacgagagtaatgctaatataatgttgttggcaattaggggtatgacttatctatgtgat
gtatatcctagatcatctggtttccttgttagacacgatgcagttcctgctctttgtgaa
agattattggctattgaatatgtggatgtagctgagcagtgtttgcaagcattggagaaa
atatctcgcgatcaaccagttgcttgtttacaagctggtgcaattatggctgctctaaat
tttattgattttttctcaattagtgtgcagagagttgcacttgccactgtggtgaacatt
tgtaagaaacttcctttggagggtcctgcaccttttgttgaagtggttcccaaattatgt
gatttacttcagcatgaggaccaacagcttgttgaaagtgttgcaacttgcttgatcaaa
atatctgagagaatgtgtcagtcttctgaactgatggaggaactctgtaagcatgagctg
attaatcaagtcacactcgttatgaaatcgaatagccgaactactatatcccagccaata
tacaatggcttgataggattacttgtcaagctttcttctggttcatttgtagcttttaga
agtctgtatgagctaaatataagcaacatactgaaggatgtcttatctacttatgacctc
tcacatggaatatctcctccagacttagttgatggcaattgcaatcaggtacatgaagtt
ctgaaattgctcaatgagctgcttcccgcctccaccggagatcaagctaatcaggtagtg
ttggataaggaatcatttttagctgaccatcatgatcttctgcaaagatttggaatggat
ttatttcccgtgctggtccaggtagtcaattctggtgctaacatatatgtttgttatggc
tgcctatctgttatcagcaagttagttgttctgagcaaacctgacatgctcggtgaattg
cttaagactgccaacattccaagtttcctggctggagtgtttactcggaaggatcaccat
ttgctgatgttagccctacagattgctgagatcatcctcaaaaagctttctgatgttttt
ttgagctcattcataaaggagggtgttttttatgtgatagacgcacttctaatgcctgaa
aaatgctcgcaattgatgcttccagtgtttggtggtatccaaccatcatttgattcaagc
caaaagtcttctgcgagggagttccagagatgcttgtgttatgcatttgatatggtgcca
tcttcctcagtctcatcttgtaagattgacaaggatactgtttgcaatcttgcaaaacat
attaaaaccaattactttgctccagaattagttgaatccgacaaagggatgactgatgtt
cttcaaaacctcagaaccttgtctgctgccttgagtagtttgataaacatgcctgttgat
gatggtactactgttcagcatgaagagaagttctacagcatattacatcaaattatgctg
aagcttaatggtagagaacctgtttccacttttgaatttattgaaagtggaatcgtgaaa
tcgcttatgcattacctgtctgatgggatgcacatgagagggaatgtggaatttactggc
agttatgatcatttggttgttctggggaagagatttgaggtgttcacaaagttgtttttt
tcttattcagatatccttgttgaggacttgcctctctctatactaatacaaaaattacag
agtggattgtcaactttggaaaatttccctgttattccaagccatggattcaagcagaga
aattcatttgctactgtcccaaatggacgttgtgttatgtatccatgttttagagttcgt
tttgtgagggcggaaggggagaactgcctatctgattgcgctgaagatgttttggctgtt
gaccctttttctcccttagatgccattgaaggatatctttggcccaaagtttttactgaa
agaacagaatatggggaattagatgctgaagagttggaacagagggaagttctgcctaat
cttttaccatcgaatgcaaactctactcaagccaagagttcaggttttatagacagcatg
tccattgatttgccagagatgcaggaagatgaagctaacttttcacagattgcctctgaa
caagttcatttcagagaattgaattctggtgaaacaatgtctttggatgaaaccaatatg
ggctctgctgggaaggaacaagagtttcctacagagtcaactaaaaatatgagaactccc
tgttctgcatctggtgacaatgacattaaagattcctcagctagactattgctttatcta
gaaggacatcaactagaccgaactttgatgctatatcaagtgattcttcaacagctacta
aattcagagaaagaatttatgacatgggcaaagttatggagtcgagtatacacgataaca
tacaaaagagctctagaatctaaccaagatgatcctcaagaacatacatatcaagaacgc
aagttctcagtatcagatcaaaagattgcctctattcagaatatgggatatttttccagc
atgtttgcttgcaaactcacttctgatttggataagtcaagtcctatttatgatatattg
tttctgctcaaacttttggaaggcatcaacaaatattcatttcatctgatgtcttgtgag
agagttcgtgcatttgctgaaggtaggaatgataacttggataatttgaaggtaatggtt
cgttcagtgtctcaaaatgaatttgtgagcagtagattgacaggaaagctagaacagcag
atgcaggatgctttcaccttatccaccggtggtatgcctttgtggtgtaatgatttagtt
tcttcttgtccctttatgtttagctttgaggcaagatgcaagtacttccgtttggctgct
tttggtccacgaagaggtcaactcaatgccatttcacgtagtaattcaggcacttcaagt
gacaggcaaactacttcaggtggtttgcctcgtaagaaatttttagtctcacgtgatcaa
attctagattctgcaaccagaatgatggacctacttgctcgtcataagggacttcttgaa
gtggagtataatgaagaagttggcactggtctcggtccaactttggaattctatactctt
gttagtcatgaatttcagaaatttggccttggcatgtggagaggggatcattgttctttt
atcacttcaactaccttgcctacagaatctgtaattctgagaaacagttctgggcttttc
cctcgtccatgttcacctaaatctgatgcgaataatggaatacagttttctcaagtacta
aaaaaatttgttcttttgggtcaaattgtcgcaaaggctattcaagacggaagagtactt
gatgtttccttctccaaagccttctacaaattaattttggggcaggaccttagtttgtat
gatatccaatctttcgatcctgagcttggtaggacgctactggagtttcaggctattatt
gttaatcagaaaaggcttcaggaatccatttgtgttgaaaacgcagcattgaaacaggac
ttgtgctttcgaaataccaggatcgaggacctttatctggactttacccttcctggttat
cctgattatgttctttcttctgagtgtaatctcaaaatggtaaattctgccaatttggag
gaatatgtcgagcttgttgtggatgctaccatacatagtggaattgccagacaagttgaa
gctttcaagtctggatttaatcagattttttcaattagccatctccatatttttacggag
gaggaactagagcgtttactctgtggagaatgtgatatctgggctttcaatgaacttctg
gaacatatcaagtttgatcatggatatacggctagcagtccaccaatcgttaatctgctg
gaaattatacaagagtttgaatattcacaaaggcgagcatttctgcagtttgtgactggt
gctccccggctacctccaggaggtttggcgtctttaattccaaaattgacaattgttcgc
aagcatagtagcaattgtgctgatacggagctgcccagtgttatgacttgtgccaattac
ctgaagttgcctccttattcttcaaaagagaagatgaaagagaagctattatatgccata
agtgaagggcaaggctcattccacctttcgtag
DBGET
integrated database retrieval system
