Gossypium hirsutum (upland cotton): 107899922
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Entry
107899922 CDS
T04793
Name
(RefSeq) UV-stimulated scaffold protein A homolog
KO
K23720
UV-stimulated scaffold protein A
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
107899922
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107899922
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
107899922
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UVSSA_N
DUF2043
AnfO_nitrog
VHS
HSBP1
DUF1400
Motif
Other DBs
NCBI-GeneID:
107899922
NCBI-ProteinID:
XP_016681147
UniProt:
A0A1U8ISR6
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Position
D08:49231695..49234493
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AA seq
666 aa
AA seq
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MAMPVEMEMEERGKVGALIEKATNSTAAEVDPRLLKAIKSVVRFSDSELRLAAHTLMDLM
KRDHSQVRYLTLLIIDELFMRSKLFRALLVENLDQLLALSVGFRRNMPLPAPPAIASTLR
SKAIEFLEKWNASFGIHYRQLRLGFDYLKNTLRFQFPNLQETAARIERERRERERRTREI
LQNKFETMKTNFSSVKEEIQATVDEIGECLDIVRTKEEGVPHVLLDDEDFVEFRSSELRQ
IRLDSLKEGEKVHENSDNKVVFDALRELFKLLVTKHLVSVQEWISLLVRVEVADNRSRDS
MLKELIDIRNSLMSVKKDCEESGCTLPKTVNKNEEEEEDFWEEGNFGLTENGSTTEPEKR
REVHSSNIEKKSKSVEDRNSKKSNKQSGNLAKVSASCKVKGKDKECSSSKGKECSGSEKS
ARSELLAEAPVLRWGSFMDNWGLVSNKDTLLNQKGLEFDNHWGRVDYDAVIPAEKIAELN
LQAIVYEENLGEIQPCHAPLKKGGLCQRRDLKICPFHGPIIPRDDAGNQINQSSSTDDTD
PGLGSDLAEQLAKQAVKNVRERDKEDARKRKLDKQSLQREKLARVREHNDAVLRDAAIAS
TSRSTVFGENMGETVGENPVGRNKQTLASMLRKKVTTKDRLAQRLLNTRATEATLRQMTQ
GEDATY
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atggcgatgccggtggagatggagatggaggagagaggaaaagtcggggctttgatagaa
aaagccacgaattcgaccgctgccgaggttgatccacgtcttctcaaagcaatcaaatca
gtggtgcggttctccgattcggagctacgactcgccgcccataccctcatggacctcatg
aaacgcgatcattcccaggttcgttatctcacgcttcttataattgatgaacttttcatg
cggtctaagctttttagagcccttttggttgagaacttagatcagttattggccttaagt
gttgggtttagaagaaatatgccgctcccagctcctccggctattgcatcaactttgcgt
tccaaggcaattgagttcttagagaagtggaatgcatcttttgggattcattacaggcag
cttaggttaggttttgattatcttaagaatactctcaggtttcagtttcctaaccttcag
gagaccgcagcaaggatagaacgagagaggagggaaagagagagaaggactagggagatt
ttacagaacaagtttgaaacgatgaaaacgaattttagttctgttaaggaagaaatacag
gctacagttgatgagattggagaatgtttagatattgttcgcactaaagaggaaggcgtg
ccacacgtcttattggatgacgaagattttgtagagtttcgatcttctgagttgaggcag
atccgtcttgattcattaaaggaaggagaaaaggttcatgagaacagcgataataaagtg
gttttcgatgcattaagagagctgtttaagcttttagtaaccaagcatctggtttcagta
caagaatggatatctcttcttgtaagagttgaagtggctgacaacaggtcacgagattcc
atgttgaaggagttgattgatatccgaaacagtctcatgtctgtgaagaaggattgtgaa
gaatctggttgtactttacccaaaactgtgaataaaaatgaagaagaggaggaagacttc
tgggaggaaggtaattttggattgactgagaatggtagtactactgaacctgagaagcga
agggaggttcacagttccaacattgaaaagaaaagtaaatctgttgaggataggaattct
aagaagtctaataaacagagtggaaatcttgctaaagtgtcagcttcttgcaaggtgaaa
ggcaaagataaagaatgcagtagttctaagggcaaagagtgttcgggtagtgaaaagtct
gctaggagtgagcttttggctgaagctccagttctcaggtggggttcattcatggataat
tggggcttagtctctaacaaggatacattattaaatcagaaaggcttggagtttgacaat
cactggggaagagtagattatgatgccgtgattccagccgagaaaattgcagaattgaat
cttcaggcgattgtttacgaggaaaacttaggagagatccaaccatgtcatgcgcctttg
aaaaaaggtggactttgtcagagaagagacttgaagatttgcccatttcatgggcccatt
atacctcgtgatgatgcaggaaaccaaatcaatcagagttcttcaacagatgatacagat
cctggtttaggctctgatttggcagagcagttagcaaaacaagctgtgaagaatgttagg
gagcgagataaagaggatgcaaggaagagaaaacttgataaacagtcattacagcgggaa
aagctagcaagagttcgggaacacaatgatgctgttcttcgtgatgctgcaatagcttca
acgtcaagatcaacagtgtttggagaaaacatgggggaaactgttggtgagaatccagtg
gggagaaacaaacaaactctagcatccatgctgcggaagaaagttacaacaaaagatagg
ttagctcagagacttttgaacacccgggcaacagaggcaacgctaagacagatgacccag
ggtgaggatgcaacttattaa
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