Gossypium hirsutum (upland cotton): 107900113
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Entry
107900113 CDS
T04793
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
ghi03015
mRNA surveillance pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107900113
09122 Translation
03013 Nucleocytoplasmic transport
107900113
03015 mRNA surveillance pathway
107900113
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107900113
03041 Spliceosome [BR:
ghi03041
]
107900113
03009 Ribosome biogenesis [BR:
ghi03009
]
107900113
03012 Translation factors [BR:
ghi03012
]
107900113
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
107900113
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107900113
mRNA cycle factors
Stress granule specific factors
107900113
Spliceosome [BR:
ghi03041
]
Complex C
Other components
EJC/TREX
107900113
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
90S particles
Helicases
107900113
Translation factors [BR:
ghi03012
]
Eukaryotic type
Initiation factors
eIF-4
107900113
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
Helicase_RecD
AAA_22
Motif
Other DBs
NCBI-GeneID:
107900113
NCBI-ProteinID:
XP_016681309
UniProt:
A0A1U8IZD1
LinkDB
All DBs
Position
A01:complement(1374793..1377573)
Genome browser
AA seq
405 aa
AA seq
DB search
MAAATTSRTARRMGAEDEKLVFETTEGIEPILSFDQMGLKDDLLRGIYNYGFEKPSAIQQ
RAVMPIINGRDVIAQAQSGTGKTSMIALTVCQVVDTASREVQALILSPTRELASQTEKVI
RTIGDFMNIQAHACIGGKSVGEDIRKLENGVHVVSGTPGRVCDMIKRRTLRTRAIKLLIL
DESDEMLSRGFKDQIYDVYRHLPPELQVCLISATLPHEILEMTSKFMTDPIRILVKRDEL
TLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSNNFTVSS
MHGDMPQKEREAIMAEFRDGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIG
RSGRFGRKGVAINFVKSDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcgacgacgagcagaacggctcggcggatgggagccgaggatgagaagcta
gtgttcgagacgacggaaggaatcgagccgatattgagtttcgaccagatggggttaaaa
gacgatctcctccgtggaatctacaattacggctttgaaaagccgtcggctattcagcag
agagctgttatgccgataatcaatggccgcgatgtgattgctcaagcccaatctggtacc
ggtaaaacttccatgattgctctcactgtttgtcaagtggtcgacaccgctagcagagag
gttcaagcgttgatattgtcacctacaagagaactggcttctcaaacagagaaagtgata
cggacaattggtgatttcatgaatatacaagcacacgcatgtattggaggcaaaagtgtg
ggtgaagatataaggaagctagaaaacggggttcatgtagtatcgggaactccaggtaga
gtctgtgatatgatcaagaggagaaccctacgtacaagagctattaaactattgattctg
gatgaatctgatgagatgttaagcagagggttcaaagatcaaatttatgatgtttacaga
catcttccacccgagcttcaggtttgtttgatatctgctacacttcctcatgaaatcttg
gaaatgacgagcaaatttatgactgatcctataaggatccttgtgaagcgtgatgagttg
actctagagggaatcaagcagttttttgtagcagttgaaagagaggagtggaagtttgat
acgctatgtgatctttatgatacattgacaatcacccaagctgtcattttctgcaacaca
aaacgaaaggttgattggctaactgagaagatgcgtagcaataactttacggtatcgtca
atgcatggggatatgcctcagaaggaaagagaggcaattatggcagagtttcgggatggt
gcaacccgtgttcttatcacaacagatgtctgggctagggggctcgatgttcaacaggtt
tccctggtgataaattatgacctcccaaataatcgagagctttacatccataggatcggt
cgatcaggtcgttttggaagaaagggtgttgctataaattttgtgaaaagtgatgacatc
aagattcttcgagatatcgagcagtactatagtacccagatcgacgaaatgccgatgaat
gtcgctgatcttatataa
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