Gossypium hirsutum (upland cotton): 107900217
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Entry
107900217 CDS
T04793
Name
(RefSeq) probable pectate lyase 4
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107900217
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107900217
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GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
107900217
NCBI-ProteinID:
XP_016681398
UniProt:
A0A1U8IYG6
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Position
D06:59847317..59848522
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AA seq
364 aa
AA seq
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MVILMASPSSSLANMNVIDKCWRGNPLWRSQRQQLAKCSVGFVGKMINNIGKNVVKYKVI
DPSDDPLSPKLGTLRYGTTMIKGKVWITFKNSMTITLQRPLLLSSFTTIDGRGIDVHITG
AGCLLVYQATDIIIHGLRIHHCKAQPPSIVMGPNAKVIPLGQMDGDAIRLVTARKVWIDH
NTLYECQDGLLDVTRGSTNITVSNNWFRNQDKVMLLGHDDGHLRDKNMKVTVIFNHFGPK
CNQRMPRVRHGYAHVANNFYQGWEQYAIGGSMSPSIKSEANFFIAPNDVGNKEVTWRKGE
KGLWKFYSVGDVFKNGASFSKQTGVGGAKPNYNQEQNFKVVDAGSVKKLTSESGVLRCSR
SLIC
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atggtcattctaatggcaagtccgagttcgagtttggctaatatgaatgtaattgataaa
tgttggagagggaaccctctttggcgaagtcaacgacaacaattggccaaatgctccgtc
ggttttgtcggcaaaatgatcaacaacattggtaaaaacgtcgtgaaatacaaggttatt
gatccttctgacgaccctttgagtcctaaattagggacccttcgttatggaaccacaatg
atcaaaggaaaagtatggatcacattcaaaaatagcatgaccatcacactccaaagacca
cttcttttaagtagcttcactaccatcgacggtcgtggcatcgatgtccacataactggc
gctggctgcctgttggtgtaccaagcgaccgatataatcatccatgggcttcgcatccac
cattgcaaggcccaaccacctagcattgtgatgggtccaaacgcgaaggtgatcccttta
ggccaaatggatggagacgctataagattggtcaccgcgaggaaagtgtggatcgatcat
aacacattgtatgagtgccaggacggcctcctcgatgtcactcgcggttccaccaacatc
accgtgtcgaacaactggttcaggaaccaagacaaagttatgctcctcggacacgacgat
ggtcatttgagagacaaaaacatgaaggtcactgtcattttcaaccattttggacctaag
tgcaaccaaagaatgccaagagttcgccatggatatgcacacgtagcgaacaatttctac
caagggtgggaacaatacgccattggtggtagcatgagccctagcatcaagagtgaagcc
aattttttcatcgctcctaatgatgttgggaacaaagaggtaacatggagaaaaggagag
aaaggtttatggaaattttattcagtaggggatgtatttaaaaatggagcatcttttagt
aagcaaacaggtgtaggtggagctaagcctaactataaccaagaacaaaattttaaggtt
gtcgatgctggatctgttaagaaattgacaagtgaatctggtgttttacgatgctccaga
agtttaatatgttga
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