Gossypium hirsutum (upland cotton): 107900472
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Entry
107900472 CDS
T04793
Name
(RefSeq) probable mediator of RNA polymerase II transcription subunit 37c
KO
K03283
heat shock 70kDa protein 1/6/8
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
ghi04141
Protein processing in endoplasmic reticulum
ghi04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107900472
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
107900472
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
107900472
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ghi01009
]
107900472
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107900472
03009 Ribosome biogenesis [BR:
ghi03009
]
107900472
03110 Chaperones and folding catalysts [BR:
ghi03110
]
107900472
04131 Membrane trafficking [BR:
ghi04131
]
107900472
03051 Proteasome [BR:
ghi03051
]
107900472
03029 Mitochondrial biogenesis [BR:
ghi03029
]
107900472
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
ghi04147
]
107900472
Protein phosphatases and associated proteins [BR:
ghi01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-5
PP5-interacting proteins
107900472
Spliceosome [BR:
ghi03041
]
Complex B
Other components
Prp19 complex
107900472
Complex C
Prp19-CDC5 complex
107900472
Ribosome biogenesis [BR:
ghi03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
107900472
Chaperones and folding catalysts [BR:
ghi03110
]
Heat shock proteins
HSP70 / DNAK
107900472
Membrane trafficking [BR:
ghi04131
]
Endocytosis
Clathrin-mediated endocytosis
Other core components
107900472
Autophagy
Chaperone mediated autophagy (CMA)
Chaperones
107900472
Proteasome [BR:
ghi03051
]
Eukaryotic proteasome
Assembling factors
Other assembling factors
107900472
Mitochondrial biogenesis [BR:
ghi03029
]
Mitochondrial protein import machinery
Endoplasmic reticulum membrane and cytosol
Other ER-memrane and cytosol factors
107900472
Exosome [BR:
ghi04147
]
Exosomal proteins
Proteins found in most exosomes
107900472
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HSP70
MreB_Mbl
FGGY_C
Hydantoinase_A
DACNG
Radial_spoke_3
Motif
Other DBs
NCBI-GeneID:
107900472
NCBI-ProteinID:
NP_001313818
UniProt:
D2D325
LinkDB
All DBs
Position
A06:121741235..121743892
Genome browser
AA seq
648 aa
AA seq
DB search
MAGKGEGPAIGIDLGTTYSCVGVWQHDRVEIIANDQGNRTTPSYVAFTDSERLIGDAAKN
QVAMNPINTVFDAKRLIGRRYSDSSVQSDMKLWPFKVIAGPGDKPMIVVTYKGEEKQFAA
EEISSMVLIKMREIAEAYLGATIKNAVVTVPAYFNDSQRQATKDAGVIAGLNVMRIINEP
TAAAIAYGLDKKASSVGEKNVLIFDLGGGTFDVSLLTIEEGIFEVKATAGDTHLGGEDFD
NRMVNHFVQEFKRKNKKDISGNPRALRRLRTACERAKRTLSSTAQTTIEIDSLYEGIDFY
TTITRARFEELNMDLFRKCMEPVEKCLRDAKMDKSSVHDVVLVGGSTRIPKVQQLLQDFF
NGKELCKSINPDEAVAYGAAVQAAILSGEGNEKVQDLLLLDVTPLSLGLETAGGVMTVLI
PRNTTIPTKKEQVFSTYSDNQPGVLIQVYEGERARTRDNNLLGKFELSGIPPAPRGVPQI
TVCFDIDANGILNVSAEDKTTGQKNKITITNDKGRLSKEEIEKMVQEAEKYKSEDEEHKK
KVEAKNALENYAYNMRNTVKDEKIGSKLDPADKKKIEDAIDGAIQWLDGNQLAEADEFED
KMKELESICNPIIAKMYQGAGADMGGGMDEDAPPTGGSSAGPKIEEVD
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggccggaaaaggagaaggaccggcgatcggtatagatctcggtacgacatactcttgc
gtcggagtatggcaacatgaccgagttgaaatcatcgccaacgaccaaggcaaccgaacg
acgccgtcctacgttgctttcaccgattccgagcgtttaatcggcgatgctgctaagaac
caagtcgccatgaatccgatcaacaccgtcttcgatgctaagcgattaatcggcagaaga
tatagcgattcgtcggttcaaagcgatatgaagctttggccttttaaggtaatcgccggt
cctggtgataagcccatgattgttgttacttacaagggcgaggaaaaacaatttgctgcc
gaggaaatctcatctatggtgttaatcaagatgcgtgaaatcgccgaggcttacctcgga
gcgacgattaagaacgctgtcgttactgtcccagcttatttcaatgactcccaaaggcaa
gctaccaaagatgctggagtcattgctggtcttaacgttatgcgaatcatcaacgagcca
acagccgccgccattgcttacggtcttgacaagaaagccagcagtgttggtgagaagaat
gtgttgattttcgatttgggtggtggtacttttgatgtttcattgcttactattgaagaa
ggtatctttgaagttaaggccactgctggtgatacacatttgggtggtgaggatttcgat
aataggatggttaaccatttcgttcaagaatttaagaggaagaataagaaggatattagt
gggaaccccagagcattgaggaggttgaggactgcttgtgagagagcaaagaggactctt
tcatcgacagctcaaactaccatcgagatcgattcattgtacgagggtattgacttttac
accacgataactcgtgcaaggtttgaggagctcaacatggatctttttaggaagtgtatg
gagccagttgagaagtgtttgagggatgctaagatggataagagcagtgtccatgatgtt
gttcttgttggtggttccactcgtattcctaaagtgcagcagttgttgcaagacttcttc
aacgggaaggagctctgcaagagcattaatcctgatgaggccgttgcttatggtgctgcg
gttcaggctgctatcttgagtggtgaaggaaatgagaaggttcaggatctattgcttttg
gatgtcactcctttgtcccttggactcgaaactgctggcggtgttatgactgttttgatt
ccgagaaacactaccattcccaccaagaaggagcaggtgttttcaacttactctgataac
caacccggtgtcttgatccaagtttatgagggtgagagagctcgaacccgggacaacaat
ttgttgggtaaattcgagctctctggcattccaccagcacccagaggcgttccccaaatt
acagtttgcttcgacattgatgctaatggtatcttgaatgtctctgctgaggacaagact
actggccagaagaacaagattacgatcacaaacgacaagggtcggttgtctaaggaagaa
atcgagaagatggttcaagaagcggagaagtacaagtccgaggatgaggagcacaagaag
aaggttgaagccaagaacgcattggagaattatgcctacaacatgaggaacactgtcaag
gatgagaagattggttcaaagcttgacccggccgacaagaagaagattgaagatgccatt
gatggagcaatccaatggttggatggcaaccagctagccgaggccgatgaattcgaggat
aagatgaaggagctcgagagcatctgcaatcctatcattgccaagatgtaccaaggtgca
ggggctgacatgggtggtggcatggatgaggatgccccacctaccggtggcagcagtgcc
ggacctaagatcgaggaagtcgactaa
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