KEGG   Gossypium hirsutum (upland cotton): 107900558
Entry
107900558         CDS       T04793                                 
Name
(RefSeq) DNA-directed RNA polymerases IV and V subunit 4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03020  RNA polymerase
ghi03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    107900558
  09124 Replication and repair
   03420 Nucleotide excision repair
    107900558
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ghi03021]
    107900558
   03400 DNA repair and recombination proteins [BR:ghi03400]
    107900558
Transcription machinery [BR:ghi03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     107900558
DNA repair and recombination proteins [BR:ghi03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      107900558
SSDB
Motif
Pfam: RNA_pol_Rpb4 DUF2240
Other DBs
NCBI-GeneID: 107900558
NCBI-ProteinID: XP_016681676
UniProt: A0A1U8IU87
LinkDB
Position
D06:58562647..58565880
AA seq 217 aa
MSEKGGRMFSLPTKTTPKSSLKSTAGKDDNSAKSKRGRKVQFGTEGSPDVNFSSPKSDGK
FATPFGKGGKGEKAANGGKTHVAKESQSLELRVEQELPENVKCLMDCEAAGILEGIQDQM
VILSSDPTIKLPESFGSGLQYAKTGSYYTNPQSVRKVLQSLTKYGVSNSEICVIANTCPE
TVDEVFALVRSLEAKRSKLTGPLKDVLEELAKLKTST
NT seq 654 nt   +upstreamnt  +downstreamnt
atgtcggagaagggtggcagaatgttctccttgcccaccaaaacaacacccaaatcttct
ctcaaatccaccgctggaaaagatgataattcagcaaaatcaaagaggggaaggaaagtt
cagtttggaactgaaggttcacctgatgttaatttctcatcgccaaaatctgatggcaag
tttgcaaccccttttggtaaaggtggaaaaggagaaaaggcagcgaatggtggaaagact
catgtggccaaagaatcacagtcattggagctcagagttgaacaggaacttccagaaaat
gttaaatgccttatggactgtgaggctgccggtatcttagaaggcattcaggatcaaatg
gttatactctccagcgatccaactattaagctccctgaatcatttggttcaggactgcag
tatgccaagactggtagctattataccaatccccagtctgttagaaaagttcttcaatct
cttacaaaatatggtgtctctaacagtgagatttgtgtgattgccaatacttgtccagaa
actgttgatgaagtttttgctcttgtccgatccttggaggctaagagaagcaaactcact
ggaccacttaaagatgtattggaagagctagctaaacttaaaacatcaacctaa

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