KEGG   Gossypium hirsutum (upland cotton): 107900636
Entry
107900636         CDS       T04793                                 
Name
(RefSeq) LOW QUALITY PROTEIN: splicing factor 3B subunit 4
  KO
K12831  splicing factor 3B subunit 4
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107900636
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:ghi03041]
    107900636
Spliceosome [BR:ghi03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    107900636
 Complex B
    107900636
 Complex C
   U2 SnRNP specific factors
    107900636
SSDB
Motif
Pfam: RRM_1 RRM_7 OB_RNB RRM_5
Other DBs
NCBI-GeneID: 107900636
NCBI-ProteinID: XP_040934881
LinkDB
Position
A10:19086349..19089145
AA seq 362 aa
MTTRIAPGVGANLLGQHSAERNQDATAYVGNLDPQVSEELLWELFVQAGPVVNVYVPKDR
VTNLHQGYGFVEFRSEEDADYAIKVLNMIKLYGKPIRVNKASQDKKSLDVGANLFIGNLD
PDVEEKLLYDTFSAFGVIVTNPKIMRDPETGNSRGFGFISYDSFEASDAAIEAMNGQYLC
NRQITVSYAYKKDTKGERHGTPAEGLAASNPSSRRAGPYLFASGPPTLPSGPQXNGGIGA
PVPPRPFPNGTVPPGPMPVARPPPLKMFPTHNAACRTSPWQGQPQHLGQXIPPPVMPPPA
MQYRPPLPTCHHPTPQSVSGLSRPPPPMGMGAPHGWPQQQMGGRPPMLQMSMPPPXPPPS
AS
NT seq 1089 nt   +upstreamnt  +downstreamnt
atgacaacgcgaatcgctccaggagttggagcgaacttgcttggtcaacactccgccgag
aggaaccaagacgccactgcttatgtcggcaatctcgatcctcaggtatctgaggagtta
ttatgggagttatttgttcaagctggtcctgttgttaatgtctatgtgccgaaagataga
gtgactaacttgcatcaaggatatggatttgtcgaattccgaagcgaagaagatgctgat
tatgctattaaggtactcaacatgattaagctttatggcaagcccatacgtgtaaataag
gcgtctcaagataaaaagagcttagatgttggagcaaaccttttcatagggaaccttgac
cctgacgtggaagagaaacttttgtacgatacttttagtgcatttggagtcattgttaca
aatcccaagataatgagagatcctgagactggaaattcacgcggttttggattcatcagc
tatgattcatttgaggcatctgatgctgctattgaggcaatgaacggccagtacctctgt
aaccgtcaaataacagtttcttacgcatataagaaagacaccaaaggggagcgtcatggc
accccagcagagggtttggcagcaagcaatccaagttccagaagagcaggcccatacttg
tttgcgagtggacctccaacacttccttctggtccccagnccaatggtggtataggagca
ccggtgccgccacgaccttttccaaatggcactgttcctcctggccctatgccagtagca
cggcctccacccctcaaaatgttccctacccacaatgcagcttgccggacatcaccttgg
cagggtcagccacagcatcttggacaancaattccacctccagtcatgcctcctcctgca
atgcagtacaggccacctctgccaacatgccaccaccccaccccacaatcagtatctggt
ctttcaaggcctccgccaccaatgggaatgggagcaccacatggttggccgcaacagcaa
atgggtggaaggcctcctatgctccaaatgtcaatgccaccccctnccccaccaccttct
gcaagttga

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