Gossypium hirsutum (upland cotton): 107900827
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Entry
107900827 CDS
T04793
Name
(RefSeq) cryptochrome-1 isoform X1
KO
K12118
cryptochrome 1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
107900827
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Motif
Pfam:
FAD_binding_7
DNA_photolyase
Cryptochrome_C
Motif
Other DBs
NCBI-GeneID:
107900827
NCBI-ProteinID:
XP_016682043
UniProt:
A0A1U8J0C8
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Position
A05:complement(30345086..30348629)
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AA seq
673 aa
AA seq
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MSSIVWFRRDLRVEDNPALLAGVRAGPVFAVFIWAPEEEGHYQPGRVSRWWLKHSLALLD
SSLRSLGTCLITKRSTDSVSSLLQIVKSTGATQLFFNHLYDPISLVRDHRAKEVLTAHGV
AVRSFNADLLYEPWDVNDDNGRPFTTFNAFWEKCLNMPFDPEAPLLPPKRITSGDVLTCT
TDVLVFEDELEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATTSFLS
PHLHFGEVSVRKVFHLVRMKQVLWANEGNKAGEESVNLFLKSIGLREYSRYLSFNHPYSH
ERPLLGHLKFFPWVVNEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSSFFVK
VLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLPDGREFDRIDNPQFEGYKFDPNGE
YVRRWLPELARLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKSRLQEALSEM
WQLEAASRAAIENGTEEGLGDSSESVPFAFPQDIQMEENIEPARNNAPATTRRYEDQMVP
SITSSLLRGEHEESSLYLRTSAEDSRAEVPGTVNINREQRRDILNQAIPETARNLQLNFP
IGLRNAEDSTAESSSSSRRERDGGVVPVWSPPSSSYPEQFISEESGIGASSSFLQGHPQS
HQIINWRRLSQTG
NT seq
2022 nt
NT seq
+upstream
nt +downstream
nt
atgtcgagcatagtttggtttagaagggatcttagagttgaagataatccagcactctta
gctggagttagggcaggccctgtttttgcagttttcatatgggcacctgaagaagaaggc
cattatcaacctggaagggtttcaagatggtggcttaaacatagtttggctcttcttgat
tcttctttgaggagcctgggaacttgtctcatcacaaagagatcaactgatagtgtttca
tctcttctccagattgttaaatccactggtgccactcagctcttcttcaatcacttgtat
gatcctatatctctggttagggatcatcgagcaaaggaagtattgacggcccatggcgta
gcagttcgatcgttcaatgcagatttgctttatgaaccttgggatgtaaatgatgataat
ggccgccctttcactacttttaatgctttctgggaaaaatgccttaacatgccatttgac
cctgaggctcctcttcttccacctaaaagaataacttcaggtgatgtgttaacttgcact
acggatgtgttggtgttcgaagatgaattggagaagggaagcaatgcgcttttagctcga
gcatggtcaccagggtggagcaatgcggataaagctttgacaacgttcattaatggacct
ttaattgagtactcgaagaacagaagaaaagctgatagtgcaacaacttcatttctttcc
ccccatttgcattttggggaggttagtgtccgaaaagtctttcatctcgtccgaatgaag
caggttttatgggctaatgaagggaacaaagctggtgaagagagtgtaaacttgtttctg
aagtcgattggcttgagggaatactcaagatacttgagttttaaccatccttacagccat
gaaaggcctcttctcggacatcttaagtttttcccttgggttgtcaatgagggttatttc
aaggcatggagacaaggaagaacaggttatccattggtggatgctggcatgagagagtta
tgggccactggttggctgcatgatcgtattcgagttgttgtatcgagtttttttgtcaaa
gttttgcagctcccatggagatggggtatgaagtatttctgggatactctcttggatgca
gatttagaaagcgatgctctcggttggcagtatatatccggtactctcccggatggtcgt
gagttcgaccgcatcgataatccgcagtttgaaggttacaaattcgatccgaatggagaa
tatgtccgtcggtggcttccagaacttgcaagactaccaactgattggattcaccatcca
tggaatgctcctgaatctgtactccaagctgctggcatcgagctcgggtcaaattaccct
ctgcctattgtaggaatagatgctgcaaaatccaggttgcaagaagcactttcagagatg
tggcaactagaagcagcttcaagagctgcaatcgagaatggaactgaggaaggcctcgga
gactcttccgagtcagtgccatttgcatttccgcaagacatacaaatggaggaaaacatt
gaaccagctaggaacaatgctccagctacaacacggagatatgaggatcagatggttcct
agcatcacttcttccttgttgagaggtgaacatgaagagtcttctttgtatcttagaact
tcagcagaagatagcagagcagaagttccaggaactgtaaatataaatcgagaacaacgg
agagacattttaaaccaagcgattccagaaacagcacgcaacctgcaacttaacttcccg
atcgggttgagaaatgctgaggattccacagcagaatcatctagtagtagtaggagagaa
agggatggcggagttgttccagtttggtccccgccatcttcgagttaccccgagcaattt
ataagtgaggaaagtggtatcggtgcaagctcatcttttcttcaagggcatccacagtcc
caccaaatcataaattggaggcgattatctcaaaccgggtaa
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