KEGG   Gossypium hirsutum (upland cotton): 107900972
Entry
107900972         CDS       T04793                                 
Name
(RefSeq) LOW QUALITY PROTEIN: katanin p80 WD40 repeat-containing subunit B1 homolog KTN80.4
  KO
K18643  katanin p80 WD40 repeat-containing subunit B1
Organism
ghi  Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   04812 Cytoskeleton proteins [BR:ghi04812]
    107900972
Cytoskeleton proteins [BR:ghi04812]
 Eukaryotic cytoskeleton proteins
  Microtubules
   Tubulin-binding proteins
    Microtubule severing proteins
     107900972
SSDB
Motif
Pfam: Katanin_con80 WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_EML_2 WD40_WDHD1_1st EIF3I WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_EML Beta-prop_SCAP ANAPC4_WD40 Beta-prop_TEP1_C Beta-prop_DCAF4 WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st NBCH_WD40 Beta-prop_IFT122_1st WDR90_beta-prop_4th Beta-prop_EIPR1 Beta-prop_SPT8 Beta-prop_IFT140_1st eIF2A Beta-prop_HPS5 Beta-prop_Vps41 Beta-prop_WDR19_1st Beta-prop_IP5PC_F Beta-prop_VPS8 Beta-prop_RIG_1st PROPPIN
Other DBs
NCBI-GeneID: 107900972
NCBI-ProteinID: XP_016682267
UniProt: A0A1U8IVW6
LinkDB
Position
A01:complement(1264012..1271881)
AA seq 813 aa
MSTKRAYKLQEFVAHSSSVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTS
GIDSVTFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGEXFASGS
LDTNLKIWDIRKKGCIHTYKGHTRGVNAIRFTPDGRWVVSGGEDNIVKVWDLTAGKLLHQ
FKDHEGQIQCLDFHPHEFLLATGSADRTVKFWDLETFELIGSAGPETAGVRCLTFNPDGR
TVLCGLHENLKVFSWEPIRCYDGVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISR
IEPYAVGNAKRVNGHSEPKSHSGGNLSVLNENTTKASIPVSQNPDPLVKETKSLGRLSIS
QNSDPAKESKTTGNAPGTPHRVNLNAARKTAQQRNDMRSEQAAELRKEVGISERSLEQVT
ESRREVGITGRSLESSQSAAESRKEAGIVGRTLEQGADSRKELGIAGRTMPFSLQSKTSS
FRKFQNSREDLDWPAISAPPENAGSRVEFSSGSDRSTLPSVKGPINGMPAAEMNVREDRC
IGSVRTEPNSVVELPSSYRDENYDAQVQKSHRDAYPLESQKGGRTRSVILNLEKRRRSNF
DGPTLFASPRNVSVANMPSFDAYKQRRRCSSSVEKEMPSATDEDAVADVMEQHDQFIGSM
QSRLAKLQVVHRLWERNDIKGAIGAMEKMSDHGVLADVMSIVTEKIDIVTLEICTSLLPL
LSGLLGSDMDRHLSICLDMLLKLVRIFGSMIYSTLSALAPAGVDIEAEQRFERCNLCFIE
LEKVKQCLPTLTRRGGSVAKSAQELNLALQEVS
NT seq 2442 nt   +upstreamnt  +downstreamnt
atgagtaccaaacgcgcttacaagctacaagaatttgtggcacattcttcaagtgtgaat
tgcctaaagattggaagaaaatcgtcgagggttcttgtgactggaggggaagatcacaag
gttaatctttgggctatcggtaaaccgaatgccatactgagtttatcgggacacacaagt
gggatagattcagtgacctttgattcctcggaagttttggtagctgcaggtgctgcaagt
ggtaccattaagctatgggatttggaggaggcaaaaattgttcggactctgactggtcat
agatccaattgcatttctgtggacttccacccctttggcgagntttttgcatctggctct
cttgatacaaatctaaagatatgggatatcagaaagaaagggtgcatccacacttacaag
ggtcatactcgaggagtcaatgcaatcaggttcacaccagatggtcgatgggttgtatcc
ggtggtgaggacaacattgtgaaggtctgggatttgactgctggaaaattgttgcatcaa
ttcaaggatcatgaaggtcaaattcagtgcttagatttccatccacatgagtttttgctg
gctacaggttcagctgatcggactgttaagttttgggatcttgaaacctttgagcttatt
ggttcagctgggcctgagactgcaggtgtccgttgcttgaccttcaatcctgatggaaga
actgtactctgtggattgcatgaaaatctgaaggttttctcatgggaaccgataagatgt
tatgatggtgtggatgtgggatggtctagattgtcagatcttaatgttcatgaaggaaag
cttcttggctgctcatataatcaaagctgtgtaggagtatgggttgtagacatctcgcgc
atagaaccatatgcagttggtaatgctaaacgtgtaaatggtcattctgaacctaaatct
cattcaggtggaaacctctctgtattgaatgagaataccacaaaagctagtatacctgtt
tcacaaaatcctgatcctttagtgaaggaaacaaaatcccttggaaggttgtccatttca
caaaactcagatcctgcgaaggagtcaaaaaccacaggaaatgcacctggtacccctcac
cgggtcaatttaaacgctgctcgaaagacagctcaacagagaaatgatatgaggtcagag
caggctgctgaattaagaaaagaagttggaatatctgagagaagtttggagcaagtcact
gaatctagaagagaagttggaattactggaagaagtttggaatcaagtcagtcggctgct
gaatcaagaaaagaagctggaatagttgggagaactttggagcagggagctgattcgaga
aaagaacttggtattgctggaagaacaatgccattttctttgcaatcaaagacatctagt
tttcggaagtttcaaaatagcagggaagacttggactggccagctatctctgctccgcct
gagaatgcaggttctagggttgaattcagcagtggttcagacaggagcactcttccttct
gttaaaggtccaattaacggaatgcctgctgcagaaatgaatgtgagggaagataggtgt
attggctctgtcaggactgaaccaaactcggtggtcgaattgccttcaagctaccgggat
gaaaattatgatgctcaagtgcaaaaatcacatagagatgcgtatcctttagaaagccaa
aaaggaggaagaacacgttcagtaatcctaaatttggagaaaaggaggagatctaatttt
gatggacctactttgtttgcctctccacggaatgtatctgtggcaaacatgccttctttc
gatgcgtataaacaaagaagacgatgctcttcttctgtggaaaaagaaatgccttcggcc
actgatgaggatgctgttgcagatgtaatggagcagcatgatcaattcattggttccatg
cagtctcgtttagctaagttacaggttgttcatcgactttgggaaaggaatgacataaag
ggggcaatcggtgcaatggaaaagatgtctgatcatggtgtgcttgctgatgtgatgagc
attgttactgaaaaaatagacattgtaacattggaaatttgcacttctcttctgccactt
ctatccggtctccttggaagtgacatggacaggcatttgagcatctgtcttgacatgctg
cttaagcttgtccggatatttggttcaatgatatattcaacattatcagctttggcacct
gccggtgtagacattgaggcagagcaaaggtttgagcgttgtaacctctgctttatagaa
ctcgaaaaagtaaagcaatgtcttcccactctcactagaagagggggatcagttgcaaaa
tctgcccaggaattgaatctagcacttcaagaagtatcatga

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