KEGG   Gossypium hirsutum (upland cotton): 107901049
Entry
107901049         CDS       T04793                                 
Name
(RefSeq) sm-like protein LSM1B isoform X1
  KO
K12620  U6 snRNA-associated Sm-like protein LSm1
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107901049
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107901049
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107901049
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     107901049
SSDB
Motif
Pfam: LSM Hfq
Other DBs
NCBI-GeneID: 107901049
NCBI-ProteinID: XP_016682375
UniProt: A0A1U8IWA6
LinkDB
Position
D06:14958226..14960534
AA seq 128 aa
MSWAGPDDIFLSTSLATYLDKKLLVLLRDGPKLLGLLRSFDQFANVILEGACERVIVGDL
YCDIPLGLYVIRGENVVLIGELDLEKEELPSRMNPVSEAEIKRAQKAEREATDLKGSMRK
RMEFLDFD
NT seq 387 nt   +upstreamnt  +downstreamnt
atgtcttgggctggccctgatgatatctttctctccacttctcttgccacctatcttgac
aagaaactccttgtcctgctcagagatggcccaaagcttttgggattattgcgttctttc
gatcaatttgctaatgttattctagaaggagcttgtgagcgagttatcgttggagatttg
tactgtgacatccccttaggtctatatgtaatccgtggggagaatgttgtcttaatagga
gagctggacttggaaaaggaggagcttccctcacgtatgaatcctgtatcggaagccgag
attaaaagggctcagaaagctgaacgggaagcaacagatctgaagggctccatgaggaaa
agaatggagttccttgattttgattaa

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