Gossypium hirsutum (upland cotton): 107901049
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Entry
107901049 CDS
T04793
Name
(RefSeq) sm-like protein LSM1B isoform X1
KO
K12620
U6 snRNA-associated Sm-like protein LSm1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107901049
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107901049
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107901049
mRNA degradation factors
5'-3' decay
Lsm complex
107901049
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Hfq
Motif
Other DBs
NCBI-GeneID:
107901049
NCBI-ProteinID:
XP_016682375
UniProt:
A0A1U8IWA6
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Position
D06:14958226..14960534
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AA seq
128 aa
AA seq
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MSWAGPDDIFLSTSLATYLDKKLLVLLRDGPKLLGLLRSFDQFANVILEGACERVIVGDL
YCDIPLGLYVIRGENVVLIGELDLEKEELPSRMNPVSEAEIKRAQKAEREATDLKGSMRK
RMEFLDFD
NT seq
387 nt
NT seq
+upstream
nt +downstream
nt
atgtcttgggctggccctgatgatatctttctctccacttctcttgccacctatcttgac
aagaaactccttgtcctgctcagagatggcccaaagcttttgggattattgcgttctttc
gatcaatttgctaatgttattctagaaggagcttgtgagcgagttatcgttggagatttg
tactgtgacatccccttaggtctatatgtaatccgtggggagaatgttgtcttaatagga
gagctggacttggaaaaggaggagcttccctcacgtatgaatcctgtatcggaagccgag
attaaaagggctcagaaagctgaacgggaagcaacagatctgaagggctccatgaggaaa
agaatggagttccttgattttgattaa
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