Gossypium hirsutum (upland cotton): 107901067
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Entry
107901067 CDS
T04793
Name
(RefSeq) lysine-specific demethylase 2B
KO
K15082
DNA repair protein RAD7
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107901067
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
NER4 complex
107901067
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LRR_At1g61320_AtMIF1
GTP1_OBG
SAM_Ste50p
Motif
Other DBs
NCBI-GeneID:
107901067
NCBI-ProteinID:
XP_016682399
UniProt:
A0A1U8J2G4
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Position
D06:14547835..14551467
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AA seq
744 aa
AA seq
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MPVLRSRKILPVQPKPRKAQANIDPPATPTQGREQPATHSSPPSLTPSPKTLGSVSGSAP
LLRRSLRLSTKASSNAGQDSVLEAEERIERRNGDVSRKRKLSVDNDVGFESGEDDESGED
EGVLSLRSGKRVTKKGPFGDGNGSGGDVEFEIDRKGKSMLVEESEDTEKPERSKERVNVK
GKRRYSREEKGKWKLLVESALDSKDESLVDGSVSDVELLAQEVNLSDEKPSKKNNRRTSQ
GRMERFRDTARQNASRFAHFNTQEEDDNILSMEAESEIPSEELEEKGVEDWPGPFSTAMK
IIRDRAANLNVRQGSSSSDKVQSLQIKWVPQKCKRKDWSKRLPPSLLDLSLRVLVDNADA
IASLAHVPDALRHKLCHMLCDSRRMDSNFFDLLLNGSPTEIRLKDCSWLTEEQFTQCFEK
CDTTNLTILQLDFCGHCFADYNLPSTLARSPNSLPALTTLSLTGAYRLSDAGLSALVSSA
PALRSVNLSQCSFLTHSAIDILATSLASVLLELFIDDCQSIDAMLVLPSLKKLEHLEVLS
VAGLESVTDSFIKEFLIARGDGIKELILMDCWKLTDSSLKIIAETCSNLRALDIGNISKL
TDTSFGYLASGCRSLQSLKLCHNAFSDDAIAAFLEMSGEVLKELALNNVGKVGLNTALSL
ARRSRNLVSLDLSWCRNLTHEATGLIVDSCLSLRVLKLFGCSQITDVFLYGHSNAKVEII
GLKLSPFLEHIKTPAQGPFQYSSV
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgccggtcctgagatcccgcaaaatccttccggtccaacccaagccccgaaaagctcag
gccaacatcgacccgcccgccactcccactcaaggccgcgaacaacccgccactcattca
tcgccgccttcactcactccctcccctaaaactcttggttcagtttccggttccgcaccc
ttacttcggcggagccttcgtctttctacgaaagcttcgtccaatgccggccaggatagt
gttttggaggcggaggaacgtatcgaacgacgaaacggggacgtttcgagaaagaggaag
ttgagtgtggataacgatgtcggttttgagagcggcgaggatgatgagagcggcgaggat
gaaggggtattgagtttgcggtcggggaagagggttactaagaagggtccatttggcgac
ggcaacggcagcggaggcgatgtagagtttgaaattgacaggaaaggtaaaagcatgtta
gtggaagagagtgaagatactgagaaaccggaaagaagcaaggagagagtgaatgtgaag
gggaaaaggagatatagtagagaagagaaaggaaagtggaaattgcttgtagaaagtgct
ttggactctaaagatgagagtttagttgacggttcagtttccgacgttgaacttctagca
caggaagtgaatttgtccgatgaaaagccaagtaagaagaataataggagaacaagtcag
gggagaatggagcggtttcgagatacggctaggcaaaatgcttctcgatttgcccatttc
aacacccaggaagaagatgataacatattatcaatggaggctgaaagcgaaattccgtcc
gaagaacttgaagaaaagggtgttgaagattggccgggtcctttctctactgctatgaag
attataagggatagagcagcgaatttgaacgtaagacaggggagttcttcctcggacaag
gtacagtccttacaaattaagtgggttcctcaaaagtgtaaaagaaaagactggtcaaag
cggctgcctccatcattgcttgatttgagcttgagggttcttgtcgataatgcagatgcg
attgcttcgcttgctcatgtgcctgatgctctgagacacaagctctgtcatatgctctgt
gactcgaggcgaatggatagtaacttttttgatctccttcttaatggatcccctactgaa
attcgcctcaaagattgttcatggttaactgaggagcagttcactcaatgttttgaaaag
tgtgacactaccaacttgacgattctccaacttgatttctgtggccactgcttcgcggat
tataatttaccttctaccttagctcggtcaccgaacagcttgcctgcactaactactttg
tcattaactggtgcatatcgtctttcggatgcggggcttagtgctcttgtttcttctgcc
cctgcattacgatctgtaaatctcagccagtgttcatttcttacccacagcgctattgac
attttagctacctccttggcatcggttctactggaactatttatcgatgattgccaaagt
attgatgcaatgctggttctgccatcattgaagaagctggagcatttggaagtgttgtca
gtagcagggttggagtctgtaactgatagttttatcaaggaatttcttattgcaagaggt
gatggtatcaaggaactgattttgatggattgttggaaattaactgattcttccttgaaa
atcattgcggaaacctgttcaaatttacgagctcttgacattggtaacatatccaaactg
acagacacttctttcggctatctggccagtggttgtcggtcattgcagtcattgaaactc
tgccacaatgcattcagtgatgatgctatagctgcatttcttgaaatgtctggggaggtt
ttgaaagagctagcactgaacaatgttgggaaggttggtcttaatacagccttatcactt
gcgaggcgttcaagaaatttggttagtctggatctatcttggtgccgaaatctgactcat
gaagctacgggcttgattgtagatagctgtttatcgctgagggtgcttaaactttttgga
tgctctcagattacagacgtctttttgtatggccattctaatgccaaggtagaaatcatt
ggtttgaagttgtctccatttctggaacatatcaaaacaccagctcagggtccatttcag
tactcttcagtatga
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