Gossypium hirsutum (upland cotton): 107901502
Help
Entry
107901502 CDS
T04793
Name
(RefSeq) RNA polymerase sigma factor sigC isoform X1
KO
K03093
RNA polymerase sigma-I factor
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107901502
Transcription machinery [BR:
ghi03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
107901502
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r4
Sigma70_r2
Sigma70_r3
Sigma70_r4_2
PLAC9
Motif
Other DBs
NCBI-GeneID:
107901502
NCBI-ProteinID:
XP_016683028
UniProt:
A0A1U8J319
LinkDB
All DBs
Position
D06:19893385..19898687
Genome browser
AA seq
577 aa
AA seq
DB search
MGFRLNLKGVFPVPSHFLPNYSPSRLPSSSSSSSSSSSVRGKEASFNSTRLSFLSVISDE
GVFLSKDPPKASASPAALQTLENGCSDIEEKVNIDKGPQSRNCSHVMVGKSHEPIRGNRS
SSCASPQTCKASRYNVLKDNLNVLEETFVDSDVLRLEREILLQLGRLGALNLFNIFLSHK
PSNIFDLSDVAANSVECNMNGLVDSEKDKIIVSSRKNKQRRKRREKAVETTIISTQLLPT
NTLHGRYQKPKRSSPKRMSDSRKRRSAVARNEVEMSKGVKVVANLERIRTTLEEETGRIV
SLSCWAEAAKLTEKALQQHLHYGWYCRDELIRTTRSLVLYFARNYRGLGIAHEDLIQAAL
SYCMGPLTYHAGSIGVLQGAERFDHTRGYKFSTYIHYWIRKSISRMVARHARGIQVPCTL
SRAIVQIQKARKALSKSHGKYPEEDEIAKITGLSLSKIRSANKCFRVVGSIDQKIGDCIN
AKYLEFIPDASICSPEKTVMRQHMKEDIHDLLNGLEKRERQVMVLRYGLTGSPPKSLEEI
GRLFRVSKEWIRRIEMKAMAKLRDKETCRNLSHYLDS
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgggttttagattgaatctcaaaggtgttttcccagttccttctcattttcttcccaat
tattcaccttccaggcttccttcttcttcttcttcttcttcttcttcttcttctgttaga
gggaaggaggcttcttttaactcaaccaggctgtctttcctgtctgtaatatctgatgaa
ggtgtgtttctatcaaaagatcctccaaaagcatctgcttcacctgcagctctgcaaaca
ttagaaaatggttgctcagatatagaagaaaaggtaaatattgacaagggaccacagtca
cggaattgttcccatgttatggttggtaaatcgcatgaaccgattagagggaacagatct
tcctcgtgcgcaagcccacagacatgcaaggcatcacgttataacgtgcttaaggataat
ctcaacgttttggaggagacatttgttgattcagatgtgttaagattggagagggaaatc
ctactacaactaggaaggcttggagctctaaatttattcaatatctttctgtctcataaa
ccttcaaatattttcgacctatctgacgttgctgccaatagtgtagagtgtaatatgaat
ggtttggtggatagtgaaaaggacaagattatcgttagctctagaaaaaataaacaacga
agaaaaagaagagaaaaagcggtagaaactactataatttctacacagttgctgcctacc
aacaccctacatggacgttatcaaaagcccaaacgttcttctcctaaaagaatgtcagac
tctagaaagagaagatcggcagttgctaggaatgaagtagaaatgtcaaagggtgttaag
gtggttgcaaacttggagaggattagaacaactttggaagaggaaaccgggagaattgtc
agcttgagttgctgggcagaagcagccaaacttactgagaaggcgctgcaacagcatttg
cattatggttggtactgcagggatgagttaataaggactacacgctccttagtcctctac
tttgcaaggaactataggggtttgggaatagcccacgaagacttaatccaggcagcacta
tcttattgtatgggacctttgacatatcatgcgggaagtataggagtcctccaaggtgca
gaaaggtttgaccacacaaggggatacaaattttctacctatatacactactggataagg
aaatcaatttcgagaatggtggcacggcatgctagagggattcaagttccctgcacgtta
agcagggcgatagtacagatacagaaagctaggaaggcccttagcaaaagccatgggaaa
tacccagaagaggacgaaattgccaagattacgggtctttctttgtccaaaatcaggtcg
gctaataaatgcttcagagttgtgggttcaattgaccagaaaattggagattgtatcaat
gcaaaatatttggaatttattccagatgcatcaatatgtagcccggagaaaactgtgatg
aggcagcacatgaaggaagatattcatgatcttttgaatggtctggaaaaaagagagagg
caagtgatggttctacgctacggactcacgggttctcccccgaagtcactcgaggagatt
gggaggctttttcgtgtgagcaaagagtggataagaaggatagagatgaaagcaatggcg
aaattgagggataaagaaacctgcagaaatttaagccactatttggactcttag
DBGET
integrated database retrieval system
