Gossypium hirsutum (upland cotton): 107901897
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Entry
107901897 CDS
T04793
Name
(RefSeq) CLIP-associated protein isoform X1
KO
K16578
CLIP-associating protein 1/2
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ghi03036
]
107901897
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
ghi04812
]
107901897
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Centrosome formation proteins
Microtubules and associated factors
Microtubule-associated proteins
107901897
Cytoskeleton proteins [BR:
ghi04812
]
Eukaryotic cytoskeleton proteins
Microtubules
Tubulin-binding proteins
Cytoplasmic linker proteins (CLIPs)
CLIP-associating proteins
107901897
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLASP_N
CEP104-like_TOG
HEAT_EF3_N
XMAP215_CLASP_TOG
HEAT
HEAT_EZ
Vac14_Fab1_bd
TOR1L1_N
HEAT_2
Cnd1
Adaptin_N
PDS5
MMS19_C
HEAT_Maestro
INTS1_R4
UTP20
Tti2
TPR_TTI1_C
DUF1908
V-ATPase_H_N
SEN1_N
Motif
Other DBs
NCBI-GeneID:
107901897
NCBI-ProteinID:
XP_016683553
UniProt:
A0A1U8J4I3
LinkDB
All DBs
Position
A07:42885131..42897399
Genome browser
AA seq
1486 aa
AA seq
DB search
MIISFLRKEMKRKNNNKENKRNFFAKYLFTNNNHSLPLIEFLSSLPNTFPQILFLLFFSK
LLELVEKFRSEERIGIQMEEALELARAKDTKERMAAVERLYHLLEGSRKSLTSSEVTSLV
DCCMDLLNDNNFRVSQGALQALASAAVLSGDHLKLHFNALVPAVVERLGDAKQPVRDAAR
RLLLTLMEDSSPTIIVERAGSYGWTHRSWRVREEFARTVTSAINLFASPELPLQRAILPP
ILQMLHDSNPGVREAAILCIEEMYMQAGTQFRDELHRHQLPASMVRDINARLEKTEMQVR
PSNGMLGGLAAGDRKPVVYNVKKSSPQAKSSSRETSLLGGEIDVTEKSIDPIKVYSDKEL
IREFEKIASTLMPEKDWSIRIAAMQRVEGLVSGGAADYPCFRGLLKQLVGPLSAQLSDRR
SSIVKQACHLLCFLSKEFLGEFESCAEMFIPVLFKLVVITVLVIAESADNCIKMMLHNCK
VACVLPRIADCAKNDRNAVLRARCCEYALLILEHWPDAPEIQRSADLYEDLIRCCVADAI
SGVRSTARMCYRMFTKTWPDRSLRLFYSFDPAIQRIINEEDGGMHRRHASPSVRDRNVKM
SFTSQTSATLNVPGYGTSAIVAMDRTSSLSSGTSLSSGLNFCQPKPAGKGAERTLESVLH
ASKQKVSAIESMLRGLDISEKQRQTSLALGVDPPSFHDPPFPAAVSASNSLTSSLGLESI
TSTVGKSGNHNGGLIMSDIITQSSKDSGKLSYRSNVAIESFPVLSSYSPRRAAVRPDRGS
IEGNSDIREGSRFIKPHIDRQYFDMPYRDVNSRHSQNNNIPNFQRPLSRKHVSGQISAER
RKSFDDNQPSLGEMSNYVDGPASLTEALSEGLSPSSDWCARVAAFMYLRSLLQQGPKGVL
EVNQNFMKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRRPFESYMERILPHVFSRLID
PKESVRKPCSTTLGIVSKTYSIDSLLPALLRSLDEQRSPKAKLAVIEFSISSFNKHATNS
EGSSNIGILMLWLAKLKPLVHDKNTKLKDVAIACIISVYSHFDPIAVLNFILSLSVEEQN
SLRRALKQYTPRIEVDLISYLQNKKERQRPKSSYDPYDAVGTWSEEGYVGVSTQDSTLIT
GPIGQETSDETQVNLFQNFGISSNADVLPSKTKELSYMVNSNDQNLGYQMGQVENLESSV
NMEGLSTPHLETNGPSRFDSLVDVKGVACDHEISSELDLNPLKPAPVKISSMPDTGPSIP
KTLHLFCNGIDESSTASKRGALQQLIEISVANDISIWIKHFNQILTTLLEVLDDSDSSIR
ELALSLIVEMLKNQKDAMEDSVEIVIEKLLHVTKDVVPKVSNEAENCLNTVMSQYDPFRC
LSVIVPLLVTEDEKTLVICINCLTKLVGQLSQEDLMSLLPSFLPAIFEAFGNQNADVRKT
VVFCLVDIYIMLGKAFLPHLEGLNSTQLRLVTIYANRISQARLGSL
NT seq
4461 nt
NT seq
+upstream
nt +downstream
nt
atgataatttcttttttgaggaaagaaatgaaaagaaaaaataataacaaagaaaataag
cgcaacttcttcgctaaatatctctttaccaataataatcattccttgcctttaattgag
tttctttcctctctgccaaacacatttcctcaaattttatttttattgtttttttccaaa
ttactggaattggttgagaaatttagatctgaggagaggatcgggatccagatggaagag
gcactagagctggcacgcgccaaagacaccaaggagcggatggcggctgtggaacgtctc
taccacctcctcgaaggttccagaaagagtctgacttcttcggaggttacttcgctcgtg
gattgctgcatggatctcctcaacgacaacaacttcagagtctcccagggcgctctccag
gctcttgcttctgccgccgtcctctctggtgatcacttgaagttgcacttcaacgcgctt
gttcccgcggttgttgaacggttaggtgacgctaagcaacccgtcagagacgctgcgaga
cgcctacttctcactctcatggaggattcttctccaacaattattgttgaaagggcgggc
tcttacggctggacgcatagaagttggagagttagggaggaatttgcccggacagtcaca
tccgcaatcaatctttttgcatctcctgagcttccacttcaacgggctattctcccccct
attttgcagatgttgcatgactcaaatcccggtgttcgtgaagctgctatattatgcatt
gaggaaatgtatatgcaggctggaactcaatttcgtgatgaacttcatcgccatcagctt
cctgcatctatggtgagagatattaatgccagactagagaaaactgagatgcaagttcga
ccttcaaatggaatgttgggtggtcttgctgctggagatagaaagcctgtagtctataat
gtcaagaaaagcagtccacaagccaagagttcttcaagggagacatctcttttgggaggt
gaaattgatgtcacagaaaaatccatagatccaattaaggtttactcagataaggagctg
ataagggaatttgagaaaattgcttctactcttatgccagaaaaagattggtccattcgc
attgctgcaatgcagagagttgaaggccttgtttctggaggtgctgctgattatccatgt
ttccggggacttttgaagcagcttgttggcccactaagtgcacagttatcagatagaagg
tcaagcattgtgaagcaggcttgccatttattgtgcttcttatcaaaggagttcttggga
gaattcgagtcatgtgctgagatgttcatcccagtccttttcaagttggttgtgattact
gtgcttgtaattgcagagtctgcagataattgcataaaaatgatgttgcataactgcaaa
gttgcctgcgtgcttccccgcatagctgattgtgcaaagaatgaccgtaatgctgtactc
cgtgccaggtgctgtgaatatgcactgttgatacttgaacattggccagatgcaccagaa
atacagcgatcagctgatttatatgaggatttgattaggtgttgtgttgctgatgccatt
agtggggtacgatcaactgctagaatgtgctacagaatgttcaccaaaacttggccagat
cgttctcttcgcttgttctactcctttgatcctgccattcaaaggataattaatgaagaa
gatggagggatgcataggcggcatgcttctccatctgtccgtgacagaaatgtaaagatg
tcatttacctctcaaacttctgctactttaaatgtacctggatatggaacatctgctata
gttgcgatggacagaacttcaagcttatcctcagggacatctctctcttctgggttgaat
ttctgccaaccaaagcccgcaggtaaaggtgctgagcgtactctggagagtgtattgcat
gcaagcaaacagaaagttagtgctattgaaagtatgcttagaggtctggacatatctgaa
aaacagaggcagacaagtttggctctaggagttgaccctccatcattccatgatccacca
ttccctgctgctgtttcagcttctaatagtctcacaagctctttaggactagaatcaatc
acctctactgttggtaaaagtggtaaccacaatggtggtctgattatgtctgatatcatc
actcaaagttccaaagattcaggcaagttgtcatatagaagtaatgtggcaattgagtct
tttccagttttatcatcatactctcccaggagggcagcagtaaggccagaccgaggttcc
attgaaggtaacagtgacatcagagagggcagtcggtttataaaaccacatattgacagg
caatattttgatatgccctatagagatgtaaactccaggcattcacagaacaataatatt
ccaaacttccagaggccactttcaagaaagcatgtatctgggcagatctctgctgaaagg
agaaagagttttgatgataaccaaccgtcacttggtgagatgtcaaattatgttgatggt
ccagcttctcttaccgaagccctaagtgaggggcttagtcctagttctgattggtgtgcc
agagttgctgcttttatgtatctccggtctttgttgcagcagggtccaaaaggtgttctg
gaagtgaatcaaaatttcatgaaggtaatgaaattgtttttccagcacttggatgaccct
caccacaaagtcgcacaggctgctctttcaacacttgctgatattattccatcatgccga
aggccctttgagagttacatggaaaggatcttaccccatgttttctcgcggttaattgat
ccaaaggagtcggttaggaaaccttgctccacaacattgggaattgttagcaaaacttat
agcatagattctcttttacctgctttgctacgttctcttgatgaacagcgatcaccaaag
gcaaagctagctgttattgagttttccattagttccttcaacaagcatgctacgaattct
gaaggttctagtaatattggcatcctgatgttatggcttgctaaattgaaacctttggtc
catgataaaaataccaagcttaaggatgtggctattgcttgcattatatctgtatattca
cattttgatccgattgctgttctaaattttattcttagtttatcagttgaagaacaaaat
tccttgagacgggcacttaaacagtacacacctcgtattgaggtggacctgataagctat
ttgcagaacaagaaagagagacagcggcctaagtcatcctatgatccatatgatgctgtt
ggaacatggtctgaagaaggatatgttggggtgtccactcaagattcaaccctgatcact
ggccctattggccaggaaacatctgatgaaactcaggttaacttatttcagaactttggg
atcagttcaaatgcagatgttcttccttccaaaaccaaagaattgtcttatatggttaat
tctaatgatcagaacttgggatatcaaatgggacaagtagagaacttggaaagtagtgtt
aacatggaaggtctatctactccacatctggaaactaacggtccgagtagatttgattct
ttggtggacgttaaaggggttgcctgtgatcatgagatttcatcagagctggatcttaat
cctctcaaacctgcacctgtaaagattagctctatgccagatacaggacctagcattcct
aaaactcttcacctgttctgcaatgggattgatgagagctctacagccagtaagcgtggt
gcacttcagcaattaattgaaatttctgtggctaatgatatctctatttggatcaagcac
ttcaatcagattttgactactctacttgaagttttagatgattccgattcctctatccga
gaacttgccctgtcattgatagttgaaatgcttaaaaaccagaaagatgctatggaagat
tctgttgaaatagtaattgagaagctgcttcatgtaacaaaggatgttgttcccaaagtt
tcaaatgaagctgagaactgcttgaatactgttatgtctcagtatgatccattcagatgt
ttaagtgttattgtacctttattagttactgaagatgagaagactctagttatttgcata
aactgtttaacaaagcttgtgggccagctatcacaggaggatctaatgtctctattgcct
tcatttttgcctgctatttttgaagcttttggaaaccagaatgcagatgtccgtaagact
gtggtattctgtttggtcgatatttatataatgcttgggaaagcatttttgccacacttg
gaagggcttaacagcacacagctgcgactggttacaatttatgctaatcggatctcacag
gccagattgggatccctatag
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