Gossypium hirsutum (upland cotton): 107902013
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Entry
107902013 CDS
T04793
Name
(RefSeq) HBS1-like protein isoform X3
KO
K14416
elongation factor 1 alpha-like protein
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107902013
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107902013
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
107902013
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
GTP_EFTU_D2
MMR_HSR1
GTP_EFTU_D4
Zn_ribbon_RanBP
Mg_chelatase
RUBY_RBDX
Motif
Other DBs
NCBI-GeneID:
107902013
NCBI-ProteinID:
XP_016683709
UniProt:
A0A1U8J672
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Position
D06:complement(26784815..26790585)
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AA seq
676 aa
AA seq
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MPRKVNYGPDYDDNYDEYDYGYEVDENAETPPQKETIKHSVWRCSICTYDNDETMSSCDI
CGVLHGPLLNNSIYDKKRTANIFDLKSSRVSSTVVGRDEAVKVSSMRSDSSNQSTEKGKH
NRLDEINILKNIEVGPPAGSRTSDNCSASVQEGWLGHVDESSVAVNLRSRGKSSLSLMPK
ERNVMVDDSSSSRNGGEANSLTSNLENISFAAKSRHSNDAKPGRAISRAQYKPEKWMLPE
KAEHSLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEKEAKLQGKGSFAYAWA
LDESAEERERGITMTVAVAYFDSKRYHVVVLDSPGHKDFVPNMITGATQADASILVIDAS
IGSFEAGMDGTKGQTREHAQLIRSFGIDQLIVAVNKMDAVDYSKERFDLIISQLGAFLRS
CGFKDSSVSWIPLSAVENQNLVSAPSDFRLSWYLGPNLLDAIDSFQPPTREFSKPLIMPI
CDVIKSPSQGQVSACGKLEAGAVRSGSKVLVMPSATIATVRSLERDSQACPIGRAGDNIA
VSLNGIDGNHVMAGGVLCHPDFPIAFAKHLELKVLVLDGATPILIGSQLEFHIHHAKEAA
RVARISFLLDSKTGKVVKKAPRCILAKQSAVVEVILQEAVCVEEFSKCKVLGRVFLRTLG
RTVAVGIVTRIVEEQQ
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgaaaagttaactatggacctgattatgatgataactacgacgaatatgactac
ggatatgaagtagatgaaaatgcagaaacacctccccaaaaagaaacaatcaaacacagt
gtgtggcgttgctccatttgtacatatgataatgatgaaaccatgtcatcatgtgatatt
tgtggggttcttcatggtcctttgctcaataactctatctatgataagaagagaacagcc
aatatttttgacttaaaatcttccagagtttcctcgactgtggttgggagggatgaagct
gttaaagtaagttctatgagatcagatagttcaaatcagtcaacagaaaaaggcaagcac
aatagattagatgagattaatattttgaagaatatagaagttggtccaccagcaggttcc
agaacttcagataactgttctgcttcagtgcaagaaggctggcttggtcatgtggatgaa
agcagtgttgcagttaatctgcgatctagggggaaaagctctttgtcattgatgccaaaa
gaaagaaatgttatggtggatgatagcagctcttcaaggaatggaggtgaggcaaatagt
ctcaccagtaatctggaaaatatttcttttgctgctaaatccaggcactccaatgatgca
aaacctggaagagcaatttcacgggcacagtataaacctgaaaagtggatgctccctgaa
aaagcagaacattcactgactcaactaaatcttgcaattgttgggcatgtggattctgga
aaatcgacgctctctggtagactgcttcaccttttgggaagaatatcccaaaaagaaatg
cacaaatatgaaaaggaggccaaattacagggaaaaggatcctttgcttatgcttgggca
ttggatgaaagtgctgaagaaagagaaaggggaattactatgactgtggctgtggcttat
tttgattcaaaaagatatcatgttgttgtccttgactccccagggcacaaagactttgtt
ccaaacatgataactggggcaacacaagctgatgcttcaattcttgtaatagatgcttct
attggttcatttgaagctggtatggatggcaccaaggggcagactagggagcatgcacaa
ctcatccgaagttttggcattgatcaacttatagttgctgttaacaaaatggatgctgta
gattattctaaggaaaggtttgatttgataatatcacagcttggggcatttctccgttct
tgtggctttaaggattcctctgtctcttggattccattgagtgctgttgaaaaccagaac
ttagtgtctgcaccttcggattttcgactatcctggtatcttggacccaatctgttagac
gcgattgattccttccaacctcctactagggagttttcaaagcctctaattatgcctata
tgtgatgttataaagtcaccttcacaagggcaggtgtctgcatgtggcaagttggaggct
ggagctgtaagaagcggatcaaaggttttagttatgccatctgcaactatagcaactgtg
cgttcgttggagcgtgattcccaagcttgcccaattggaagggctggagataatatagct
gtcagcctgaatggaatagacggaaaccatgtgatggctggtggtgtgttatgtcatcct
gattttccaattgcatttgcaaagcatttggagttgaaggtgcttgttttggacggtgca
actccaattttaattggttctcagttggagtttcacatacaccatgcaaaggaggctgca
agagttgcaaggatatcatttttacttgattcaaagactgggaaagttgtgaagaaagca
ccccgctgcattcttgctaagcagagtgcagttgttgaggtgattttgcaggaagcggtt
tgcgtggaagagttttcgaaatgcaaagtccttggaagggtgtttcttaggacattagga
agaacggttgctgtgggcatcgtgacccgaatagtggaggagcagcaatag
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