KEGG   Gossypium hirsutum (upland cotton): 107902013
Entry
107902013         CDS       T04793                                 
Name
(RefSeq) HBS1-like protein isoform X3
  KO
K14416  elongation factor 1 alpha-like protein
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    107902013
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107902013
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     107902013
SSDB
Motif
Pfam: GTP_EFTU GTP-eEF1A_C GTP_EFTU_D3 GTP_EFTU_D2 MMR_HSR1 GTP_EFTU_D4 Zn_ribbon_RanBP Mg_chelatase RUBY_RBDX
Other DBs
NCBI-GeneID: 107902013
NCBI-ProteinID: XP_016683709
UniProt: A0A1U8J672
LinkDB
Position
D06:complement(26784815..26790585)
AA seq 676 aa
MPRKVNYGPDYDDNYDEYDYGYEVDENAETPPQKETIKHSVWRCSICTYDNDETMSSCDI
CGVLHGPLLNNSIYDKKRTANIFDLKSSRVSSTVVGRDEAVKVSSMRSDSSNQSTEKGKH
NRLDEINILKNIEVGPPAGSRTSDNCSASVQEGWLGHVDESSVAVNLRSRGKSSLSLMPK
ERNVMVDDSSSSRNGGEANSLTSNLENISFAAKSRHSNDAKPGRAISRAQYKPEKWMLPE
KAEHSLTQLNLAIVGHVDSGKSTLSGRLLHLLGRISQKEMHKYEKEAKLQGKGSFAYAWA
LDESAEERERGITMTVAVAYFDSKRYHVVVLDSPGHKDFVPNMITGATQADASILVIDAS
IGSFEAGMDGTKGQTREHAQLIRSFGIDQLIVAVNKMDAVDYSKERFDLIISQLGAFLRS
CGFKDSSVSWIPLSAVENQNLVSAPSDFRLSWYLGPNLLDAIDSFQPPTREFSKPLIMPI
CDVIKSPSQGQVSACGKLEAGAVRSGSKVLVMPSATIATVRSLERDSQACPIGRAGDNIA
VSLNGIDGNHVMAGGVLCHPDFPIAFAKHLELKVLVLDGATPILIGSQLEFHIHHAKEAA
RVARISFLLDSKTGKVVKKAPRCILAKQSAVVEVILQEAVCVEEFSKCKVLGRVFLRTLG
RTVAVGIVTRIVEEQQ
NT seq 2031 nt   +upstreamnt  +downstreamnt
atgcctcgaaaagttaactatggacctgattatgatgataactacgacgaatatgactac
ggatatgaagtagatgaaaatgcagaaacacctccccaaaaagaaacaatcaaacacagt
gtgtggcgttgctccatttgtacatatgataatgatgaaaccatgtcatcatgtgatatt
tgtggggttcttcatggtcctttgctcaataactctatctatgataagaagagaacagcc
aatatttttgacttaaaatcttccagagtttcctcgactgtggttgggagggatgaagct
gttaaagtaagttctatgagatcagatagttcaaatcagtcaacagaaaaaggcaagcac
aatagattagatgagattaatattttgaagaatatagaagttggtccaccagcaggttcc
agaacttcagataactgttctgcttcagtgcaagaaggctggcttggtcatgtggatgaa
agcagtgttgcagttaatctgcgatctagggggaaaagctctttgtcattgatgccaaaa
gaaagaaatgttatggtggatgatagcagctcttcaaggaatggaggtgaggcaaatagt
ctcaccagtaatctggaaaatatttcttttgctgctaaatccaggcactccaatgatgca
aaacctggaagagcaatttcacgggcacagtataaacctgaaaagtggatgctccctgaa
aaagcagaacattcactgactcaactaaatcttgcaattgttgggcatgtggattctgga
aaatcgacgctctctggtagactgcttcaccttttgggaagaatatcccaaaaagaaatg
cacaaatatgaaaaggaggccaaattacagggaaaaggatcctttgcttatgcttgggca
ttggatgaaagtgctgaagaaagagaaaggggaattactatgactgtggctgtggcttat
tttgattcaaaaagatatcatgttgttgtccttgactccccagggcacaaagactttgtt
ccaaacatgataactggggcaacacaagctgatgcttcaattcttgtaatagatgcttct
attggttcatttgaagctggtatggatggcaccaaggggcagactagggagcatgcacaa
ctcatccgaagttttggcattgatcaacttatagttgctgttaacaaaatggatgctgta
gattattctaaggaaaggtttgatttgataatatcacagcttggggcatttctccgttct
tgtggctttaaggattcctctgtctcttggattccattgagtgctgttgaaaaccagaac
ttagtgtctgcaccttcggattttcgactatcctggtatcttggacccaatctgttagac
gcgattgattccttccaacctcctactagggagttttcaaagcctctaattatgcctata
tgtgatgttataaagtcaccttcacaagggcaggtgtctgcatgtggcaagttggaggct
ggagctgtaagaagcggatcaaaggttttagttatgccatctgcaactatagcaactgtg
cgttcgttggagcgtgattcccaagcttgcccaattggaagggctggagataatatagct
gtcagcctgaatggaatagacggaaaccatgtgatggctggtggtgtgttatgtcatcct
gattttccaattgcatttgcaaagcatttggagttgaaggtgcttgttttggacggtgca
actccaattttaattggttctcagttggagtttcacatacaccatgcaaaggaggctgca
agagttgcaaggatatcatttttacttgattcaaagactgggaaagttgtgaagaaagca
ccccgctgcattcttgctaagcagagtgcagttgttgaggtgattttgcaggaagcggtt
tgcgtggaagagttttcgaaatgcaaagtccttggaagggtgtttcttaggacattagga
agaacggttgctgtgggcatcgtgacccgaatagtggaggagcagcaatag

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