KEGG   Gossypium hirsutum (upland cotton): 107902594
Entry
107902594         CDS       T04793                                 
Name
(RefSeq) protein SPA1-RELATED 3 isoform X1
  KO
K26557  protein SPA1-related 3/4
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    107902594
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:ghi04121]
    107902594
Ubiquitin system [BR:ghi04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Multi subunit type E3 associated proteins
    107902594
SSDB
Motif
Pfam: WD40_Prp19 WD40_CDC20-Fz WD40 WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_EML_2 WDR55 EIF3I Beta-prop_EIPR1 Pkinase Beta-prop_RIG_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR19_1st Beta-prop_EML Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C ANAPC4_WD40 Beta-prop_IFT140_1st WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_WDR35_TULP_N Beta-prop_SCAP PK_Tyr_Ser-Thr Beta-prop_DCAF12 WD40_RFWD3 WDR90_beta-prop_4th NBCH_WD40 Beta-prop_Vps41
Other DBs
NCBI-GeneID: 107902594
NCBI-ProteinID: XP_016684237
UniProt: A0A1U8J1L9
LinkDB
Position
A11:complement(118607385..118613832)
AA seq 924 aa
MIQYDNGRSERLGNFFDYWMFMWWSSCNSWRITMEGSSESAWQQECDSSRALDTSGVSDR
GPSSFRAERTGISGDFGFTEEDGRDVLTHNDNLRSQIGVSGVCETAVNPFVRSIEWGDVS
LRQWLDKPERSVDVFECLHIFRQIVEIVNIAHSQGIVVHNVRPSCFVMSSFNHISFIESA
SSSDSGSDSVEDALNSQNMEEVKGLSSTLPLDMHQQRRLIKDYVQTPTNALSEASCMQSG
SVCPRNAQLEESEENKIIDYRNSEQVEEKKQPFPMKQMLLMETSWYTSPEEVAGSPSTCA
SDIYRLGVLLFELFCPFSSREEKTRTMSSLRHRVLPPQLLLRWPKEASFCLWLLLPEPNS
RPKMGELLQSEFLNEPRDNLEEREAAIELRERIEEEELLVEFLLLVQRRKQEVADRLQDT
ISFLCSDIAEVMKQQAILKEKGNSCMEPGRDDNSTSNLPSINIVDIDDSSSLGSRKRFRP
GLRVPNVEECGDNLETRQKFDTQTENRESFLQKSSRLMKNFKKLESAYFLTRCRPVKQSG
KPSGRQTPLSSDGRGSIVMTERSSVNNLTSKESCSESSESGWINPFLEGLCKYLSYSKLK
VKANLKQGDLLNSSNLVCSLGFDRDAEFFATAGVNKKIKVFECDAVINQNRDIHYPVVEM
ASRSKLSSICWNSYIKSQIASSNFEGVVQVWDVTRSQVLTEMREHEKRVWSIDFSSADPT
VLASGSDDGSVKLWSINQGASICTIRTRANVCCVQFPSESGRSLAFGSADHKIYYYDLRN
SRIPLCTLVGHNKTVSDVKFVDANTLVSSSTDNTLKLWDLSVSNSQVIDTPLQSFTGHMN
VKNFVGLSVSDGYIATGSETNEVFIYHKAFPMPALTFKFNNMDPLSGQEMDDAAQFISSV
CWRGRSSTLVAANSTGNIKILEMV
NT seq 2775 nt   +upstreamnt  +downstreamnt
atgattcaatatgataatggtagaagtgagagattggggaattttttcgattattggatg
tttatgtggtggtcttcatgcaattcttggaggataacaatggagggttcatctgaatct
gcttggcagcaggagtgtgatagttctagggcattggatacttctggtgtctcagatagg
ggtccaagttcgtttcgtgcagaaaggaccggcatttcaggtgattttgggtttacggaa
gaggatggtagggacgtgttgactcataatgataaccttagaagccaaattggtgtttcc
ggggtttgcgagacggcagtaaacccttttgttcgttctattgaatggggtgatgttagc
ttgaggcaatggttggataaaccggaaagatcggttgatgtctttgaatgtttgcacatt
tttagacaaatagttgagattgtaaatatagcacattcacaagggatcgttgttcataat
gttcgaccttcgtgctttgttatgtcctcgtttaatcacatttccttcattgaatctgca
tcttcttcggattcgggatcggattctgtcgaggatgcattaaatagccaaaatatggaa
gaagttaagggtttgtcctctactttgccccttgacatgcatcaacaacgtaggctgata
aaagattatgtacaaactccaacaaatgctttatctgaagctagttgcatgcagtcgggc
tcagtttgtccaaggaatgctcaattagaggagagtgaagaaaataaaatcatcgactat
cgaaattctgagcaagtagaagagaaaaagcaaccattccccatgaaacagatgttgctc
atggagaccagttggtacaccagtcctgaagaggttgctggctctcccagtacgtgtgct
tccgacatctataggttgggagttctccttttcgagttattctgccctttcagttcaaga
gaagagaagactagaactatgtctagtttaagacatcgagttcttcctccacagttgcta
ctaaggtggccgaaggaagcttcgttttgtttgtggttgttgcttcctgagccaaatagt
cgtccaaaaatgggtgagttgttacagagtgagtttcttaatgaaccaagggataatctg
gaagaacgtgaagctgcaattgagctccgggagagaatagaggaggaggagttactggtg
gaattccttttgcttgtacaacgaaggaaacaggaagttgctgataggttgcaagatact
atttcttttctatgttccgacattgcagaagttatgaagcagcaagcaatcttgaaggaa
aagggaaactcatgcatggaaccagggagagatgacaattctacatcgaatcttccctca
ataaatattgtcgatattgatgattcttctagcttgggatctagaaaacgatttagacca
ggacttagggttccaaatgttgaagaatgtggtgataatctagaaactcgtcaaaagttt
gatacacagactgaaaatcgagaaagttttctccagaaaagttctcggttgatgaaaaac
tttaagaaactcgagtcagcatattttttaacaaggtgcagaccagtgaagcaatccggg
aagccatcgggtagacaaacaccattgagtagtgatggccgaggatcgattgttatgacc
gaaagaagttctgtcaataatttaacatcgaaagagagctgtagcgagagctcggaaagc
ggatggataaacccattccttgagggcttgtgcaagtatctatcttacagcaagttaaaa
gttaaggcaaatttgaaacaaggagatttattaaattcttccaatctggtatgctctctc
gggtttgatcgcgacgcagaattttttgctacagctggtgtaaataagaagattaaagta
tttgaatgtgatgcggtcataaatcaaaatcgtgacatccactatcctgtggttgaaatg
gctagtcgttcaaagctaagcagtatatgttggaatagttatataaaaagtcagattgca
tcgagtaactttgaaggagtggtgcaggtgtgggatgtcacaagaagtcaagtactcact
gaaatgagagaacatgagaaacgcgtatggtccatcgacttttcatcagcagatccaaca
gttttggctagtgggagcgatgacggctctgtaaagctatggagtatcaatcagggagca
agtatttgtaccatcaggacaagggccaatgtttgctgcgtccagtttccttccgaatct
ggtcgttctcttgcattcggatcagctgatcataaaatttattactatgatcttcgaaac
tctaggattcctctatgcacgctagttggacacaataaaaccgtgagtgacgtcaagttt
gttgatgcaaatactctcgtgtcttcttccacggataatactttgaagctttgggatttg
tcagtgagcaattctcaggttattgatactccccttcagtcctttactggccacatgaat
gtaaagaactttgtgggcttgtcggtatccgatggttacattgctactggctctgagact
aatgaggtattcatataccataaagctttcccgatgccagcgttgacattcaagttcaac
aacatggatccactttccggacaagaaatggatgatgccgcgcagtttatctcgtctgtt
tgttggcgcggccggtcttctaccctagtagctgcaaattcaaccgggaatatcaaaatt
ctggagatggtttag

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