Gossypium hirsutum (upland cotton): 107902776
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Entry
107902776 CDS
T04793
Name
(RefSeq) structural maintenance of chromosomes protein 3
KO
K06669
structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
ghi03036
]
107902776
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
ghi00535
]
107902776
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
107902776
Meiosis-specific proteins
Cohesin complex and associated proteins
107902776
Proteoglycans [BR:
ghi00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
107902776
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_15
ATG14
Motif
Other DBs
NCBI-GeneID:
107902776
NCBI-ProteinID:
XP_040949329
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Position
D05:complement(6481516..6499969)
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AA seq
1200 aa
AA seq
DB search
MFIKQIIIEGFKSYREQIATEPFSPKVNCVVGANGSGKTNFFHAIRFVLSDLFQNLRSED
RHALLHEGAGHQVLSAFVEIVFDNSDNRIPVDKEEVRLRRTIGLKKDEYFLDGKHITKTE
VMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSERLDLLKEIGGTRVYEERRRESLKIMQ
ETGNKRKQIIQVVQYLDERLKELDEEKEELRKYQQLDKQRKSLEYTIYDKELQDARRKLE
EVEEARTKVSEKSSEMYNAVLDSHERFKDLDKKSKDLMKELQGLNKDKEALETKQAEAIK
KQTALELDVKDLEERMSGNMQAKEDAVKQLRMLQKEIQESTEELNRIKPLYDNQLKKEEN
ITKGIMEREKQLSILYQKQGRATQFSSKAARDKWLQKEIDDLEQVLYSNSSQEQKLQEEI
FGLNEELERLDESIVRRKTEIKELESSIAKSRFNSQKTERDKLQDERKSLWEKESKLSAE
IDKLKAEVEKAEKSLDHATPGDVRRGLNSIRKICREYNIGGVFGPIIELLNCDEKFFTAV
EVTAGNSLFHVVVEKDEISTQIIRHLNSLKGGRVTFIPLNRVKAPHVTYPQSSDVIPLLK
KLNFSSKYAPAFAQVFGRTVICRDIDVATRVARTDGLDCITLEGDQVSKKGGMTGGFYDY
RRSKLKFMNIIRQNTMSINKKEEELKGIGLELQKLEQKITAFVTEQQQLDAKRVLDKSVL
EQHKQDIANANKQKQYTSKALENKRKSLADVQMQIDQLRASMAMKRAEMGTDLIDHLTPE
EKDLLSRLNPEITDLKEQLINCRSDRIETESRKAELETNLTTNLKRQKQELEAIISAAEA
DALLDEAESKRQELMDANLLVDDATQQLKRVSDRIDELTKQLRGIKDEKNNLKGLEDAYE
RTLQDEAKELEQLLSKRSNLLAKQEEYSKKIRELGPLSSDAFETYKRKQIKELQKMLHRC
NEQLQQFSHVNKKALDQYVNFTEQREELQKRQAELDSGDEKIKELIEVLDQRKDESIERT
FKGVARHFREVFSELVQGGHGHLVMMKKKDGDDDDDDDDGPREADLEGRVEKYIGVKVKV
SFTGQGETQSMKQLSGGQKTVVALTLIFAIQRCDPAPFYLFDEIDAALDPQYRTAVGNMI
RRLADMANTQFITTTFRPELVKVADHIYGVTHKNRVSRVNVVSKEDALDFIEHDQSHNAE
NT seq
3603 nt
NT seq
+upstream
nt +downstream
nt
atgtttataaaacagatcattatcgaagggttcaaaagctacagggagcagattgctacc
gagcctttcagcccaaaagttaattgtgttgttggtgctaatggttctggcaaaacaaat
tttttccatgcaattcgttttgttttgagcgacctcttccagaatctgcgcagtgaagat
aggcatgcactactacatgaaggtgcaggacaccaggttttgtctgcatttgtggagatt
gtttttgataattctgacaatcgtatcccggttgacaaggaggaggtacgcctacgtcga
acaattgggttgaagaaggatgagtatttcttggatggaaagcatattacgaaaactgaa
gttatgaatttactggaaagcgctgggttctctcgttctaatccttattatgttgtgcaa
caaggcaagatagcatcattaacattgatgaaagattctgagaggctggacttgctgaaa
gaaattggtggtactcgagtttatgaagagagacgccgtgaaagcttgaaaatcatgcag
gaaactggcaataaaaggaagcaaataatacaagttgttcagtacttagatgagagatta
aaagaactggatgaagagaaagaagagcttagaaaatatcagcagcttgacaagcagaga
aagtctctagaatacaccatttatgataaagaacttcaagatgctcggcgtaaattggaa
gaggtagaagaagctcgaaccaaggtttctgaaaaatcatctgagatgtataatgctgtg
ctggattcccatgaaaggttcaaggacttagacaagaagtctaaagatctaatgaaggag
cttcaaggtttaaacaaagataaagaagccttagaaactaaacaagcggaagctataaag
aagcagactgcgctagagcttgatgtaaaagatttagaagagaggatgtctgggaacatg
caagctaaagaggatgcagtcaaacagcttcgaatgctgcagaaggagatacaggagtca
acagaggagcttaacaggattaaaccactctatgacaaccaattaaaaaaggaggagaat
ataacaaaagggattatggagcgtgaaaagcagcttagcattctttatcagaaacaaggt
cgtgctactcagttttccagtaaagctgctcgtgataaatggcttcaaaaggaaattgat
gatttggaacaagtgctttattcaaattcatcacaggagcaaaaactccaggaggaaatt
tttgggcttaatgaggaattggagcgattggatgaatccattgtaagacgcaaaactgaa
atcaaagagttggaatcttcaattgccaagtcccggtttaattctcagaaaactgaaaga
gataagctgcaggatgaaaggaagtccttatgggaaaaagaaagtaaactttccgctgaa
attgataagctgaaagcagaggttgagaaagcagaaaagagccttgatcatgcaactcct
ggagatgtaagaagagggctgaattctattaggaagatatgcagagaatataatattggt
ggagtgtttggtccaattattgagctgcttaattgtgatgagaagttttttactgcagtt
gaagtaactgctggaaacagtttgtttcacgtggttgttgaaaaggatgagatatcaacc
cagataattcgacatcttaattcactgaaaggaggacgtgttacttttataccactaaac
cgcgtgaaggctccacatgttacatatccacaaagttctgacgtgatacctctgttaaag
aaattgaacttttcttccaaatatgctccagcatttgcacaggtgtttggtagaacagta
atctgccgagatatagatgtggctacaagagttgctcgaactgatggtctggattgcata
actttggaaggtgatcaagttagcaagaagggtggtatgactgggggattttatgattat
aggcgctcaaaattaaagttcatgaatataatcaggcaaaacacgatgtctattaataag
aaggaagaagaactgaaaggaatcggcttagagcttcaaaagttagagcagaaaatcaca
gcttttgtcactgaacagcagcaacttgatgctaagcgggttcttgacaaatcagtgctg
gagcagcataagcaggacattgctaatgctaataagcaaaaacagtatacatctaaagct
cttgaaaataagagaaaatcacttgcagatgtgcagatgcaaattgatcagcttagagct
agtatggcaatgaaacgtgctgaaatgggcacagatcttattgatcacttaacaccagaa
gagaaggaccttttgtcgagattgaaccctgagataacagatcttaaagagcaacttatc
aattgcaggagtgatcgtattgagactgaatcaagaaaagcagaacttgagacgaatctc
acaacaaaccttaagaggcaaaagcaagagttggaagcaataatatctgcggcagaggct
gatgcattgcttgatgaagctgaatcaaagaggcaggaattaatggatgctaatttgttg
gttgacgatgctacacagcaacttaaaagagtttctgatagaattgatgagctaacaaag
caacttaggggaatcaaggatgaaaagaacaatctgaagggattggaagatgcctatgag
aggacacttcaggatgaagcaaaagagttggagcaattgctaagtaaaaggagtaatctt
cttgctaagcaggaggagtactccaagaaaataagggagttgggccctttgtcatctgac
gcttttgaaacgtacaagcgaaagcagatcaaagagttgcagaaaatgcttcataggtgc
aatgagcagctgcaacagttcagccatgtaaacaagaaagcacttgaccagtatgtaaat
ttcactgagcaaagagaagaactgcagaaaaggcaggcagagctggattcaggtgatgag
aaaattaaagaacttatagaagttctagatcagcgcaaggatgagtcaatagaacgaact
ttcaaaggtgttgcccggcactttagagaagtattctcagaacttgtacaaggtggtcat
ggtcatttggtgatgatgaagaaaaaggatggtgatgatgatgatgatgatgatgatgga
cctcgagaggcagatttggagggaagagttgagaaatacattggtgtgaaagtgaaggtt
tcctttaccgggcaaggtgagacacaatcaatgaagcaattatcaggaggacagaaaact
gttgtagcccttacattaattttcgcgattcaacgatgtgatccggctccattttatctt
tttgatgagatagatgcagctctggatcctcagtaccggactgcagttggaaatatgatt
cgtcgactggcagacatggcaaatacacaattcataactaccacatttcggccagagctt
gtcaaagttgctgatcatatatatggtgtgacacataaaaacagggtgagccgtgttaat
gttgtctccaaggaagatgcgttagattttattgagcacgatcagtctcacaatgctgaa
taa
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