Gossypium hirsutum (upland cotton): 107903180
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Entry
107903180 CDS
T04793
Name
(RefSeq) polyadenylate-binding protein 2-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107903180
09123 Folding, sorting and degradation
03018 RNA degradation
107903180
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107903180
03041 Spliceosome [BR:
ghi03041
]
107903180
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
107903180
mRNA cycle factors
Stress granule specific factors
107903180
Spliceosome [BR:
ghi03041
]
Complex C
Other components
Complex C specific factors
107903180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_3
RRM_occluded
RRM_7
RRM_Nup35
RRM_MARF1
DUF5062
Motif
Other DBs
NCBI-GeneID:
107903180
NCBI-ProteinID:
XP_016684712
UniProt:
A0A1U8J310
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All DBs
Position
D05:complement(18495824..18500126)
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AA seq
651 aa
AA seq
DB search
MAQIHVQYQAPVSGPNGVAPGPGGPQFMLTSLYVGDLDASVTDEQLFQTFSQVAQVASVR
VCRDLATGRSLGYGYVNYNNPRDAARALDLLNFTPLNNKPIRIMYSQRDPSLRKSGAANI
FIKNLDKSIDHKALHDTFSSFGNILSCKIATDGFGQSKGYGFVQFDNEESAQNAIDKLNG
MLINDKQVYVGPFLRKQERDSALDKTKFNNVYVKNLSESTTDEDLKTIFGEYGEITSAVV
MRDADGKSKGFGFVNFEDADAAAKAVEALNGKKLDEKEWYVGKALKKSEREHERKAQYEQ
TLKEAADKLQGLNLYIKNLDDGIGDEALKELFSEFGTITSCKVMRDPSGISKGSGFVAFS
TPEEASRALAEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQMRPLAISSVSPRIPMYP
SGAPGLGQQFLYGQGPPAIIPPQAGFGYQQQLVPEMRPGGPPVPNFFVPMVQQGQQGQRP
GGRRGAGPVQQTQQPVPLIQQQMLPRGRVYRYPPGRMMPEGPMSNVPGGMLSVPYDMGGM
PMRDAGVGQPMPVPALATALANATPEQQRTMLGESLYPLVERLERDSAAKVTGMLLEMDQ
TEVLHLLESPEALKAKVAEAMEVLRSVAAQQQANNPADRLASLSLNDNLVS
NT seq
1956 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaattcatgttcagtaccaggcgccagtttccgggccaaacggcgttgctccc
ggacctgggggaccgcagtttatgctgacttcactctatgttggggatcttgatgcttcc
gttaccgatgagcaactcttccaaacgtttagccaggtggctcaggtcgcctcagtaaga
gtttgtcgggacttggctaccggtcgctctctcggctacggctatgtcaactataacaat
cctcgtgatgcggctagggcattggatctacttaatttcactccactgaataacaagcct
attcgcatcatgtattctcagcgagatcctagtcttcgtaagagtggcgctgcaaacata
tttatcaagaacttggacaagtctatcgaccacaaagcattacatgatacattttcttca
tttggcaacattctttcgtgcaagattgctactgatggttttggccagtctaaaggctat
ggttttgtacaatttgacaatgaagaatctgctcaaaatgctattgataaattaaatggc
atgttgattaatgacaagcaggtctatgttggacctttccttcgtaagcaggaaagagac
agtgctctagataagactaaatttaataatgtttatgtgaaaaatctttccgagtctacg
acagatgaagacttaaaaacaatctttggcgagtatggtgaaattactagtgctgtagtt
atgagggatgcagatgggaagtcaaagggttttggatttgtcaactttgaagatgctgat
gctgctgctaaagctgttgaagctcttaatggaaagaagttggacgaaaaagagtggtat
gttggaaaagcccttaaaaagtctgaaagagagcatgaacgaaaagcccaatatgagcag
actttgaaggaagctgctgataagttacagggtttgaatttatacattaaaaacttagat
gatggtattggtgatgaagcgttgaaggaacttttttctgagtttggtaccattacttca
tgcaaggttatgcgtgatcctagtggaattagtaagggctctgggtttgtggccttctca
acccctgaagaagcatctcgtgctcttgctgagatgaatggtaaaatggttgttagcaaa
ccgctttatgtggcgcttgcgcagaggaaagaagagagaagagcaaggctacaggctcag
ttttctcagatgaggccacttgctatttcttctgtctctcctcgaattccaatgtatcct
tctggtgctccaggtcttggccaacagtttttatatgggcaaggacctccagctatcatt
cctccgcaagctggttttggttatcaacaacaactggttcctgaaatgaggcctggtgga
ccccctgtgccaaatttctttgttcctatggtacagcaaggtcagcagggccagcgacca
gggggacgacgaggagctggtccagtgcaacagactcagcaaccagtgccattgatacaa
cagcaaatgctgcccaggggacgtgtctatcgttacccacctggtcgtatgatgcctgag
ggtccaatgtcaaatgttcccggtggcatgctttctgttccatatgacatgggtggcatg
ccaatgcgcgatgctggtgttgggcaacctatgccagtaccagcattggctacagctctc
gcaaatgcaacgcctgaacagcaaaggacgatgcttggtgaaagcttatacccccttgtg
gaacggttggagcgtgattctgcagccaaggttacagggatgcttctggaaatggaccaa
actgaggttttgcatctccttgagtcaccagaagctttgaaggcaaaagtagccgaggcc
atggaggtattgaggagtgttgctgctcagcaacaggccaacaatccagcagaccgattg
gcttcactatccctgaatgataaccttgtgtcctga
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