Gossypium hirsutum (upland cotton): 107903391
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Entry
107903391 CDS
T04793
Name
(RefSeq) sm-like protein LSM36B
KO
K12625
U6 snRNA-associated Sm-like protein LSm6
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107903391
09123 Folding, sorting and degradation
03018 RNA degradation
107903391
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107903391
03041 Spliceosome [BR:
ghi03041
]
107903391
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
107903391
mRNA degradation factors
5'-3' decay
Lsm complex
107903391
Spliceosome [BR:
ghi03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
107903391
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
107903391
NCBI-ProteinID:
XP_016684907
UniProt:
A0A1U8LH91
LinkDB
All DBs
Position
D02:complement(626324..629047)
Genome browser
AA seq
91 aa
AA seq
DB search
MSTTGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
GQLKNKYGDAFIRGNNVLYISTSKRTLADGA
NT seq
276 nt
NT seq
+upstream
nt +downstream
nt
atgagtacaacaggagagaaagggtcggcaactacgaaaacacctgcagatttcctcaaa
tcgattcgtggtcgaccagttgtcgtgaaactcaattccggtgttgattatagaggtatc
ctagcttgcctagatggatatatgaacatagctatggaacaaacagaagaatatgtcaat
ggacaattaaaaaacaaatacggtgacgcatttattcgcgggaataacgtactttatata
agcacatcaaagaggacattagctgatggtgcatag
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