KEGG   Gossypium hirsutum (upland cotton): 107903391
Entry
107903391         CDS       T04793                                 
Name
(RefSeq) sm-like protein LSM36B
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
ghi  Gossypium hirsutum (upland cotton)
Pathway
ghi03018  RNA degradation
ghi03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ghi00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    107903391
  09123 Folding, sorting and degradation
   03018 RNA degradation
    107903391
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ghi03019]
    107903391
   03041 Spliceosome [BR:ghi03041]
    107903391
Messenger RNA biogenesis [BR:ghi03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     107903391
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     107903391
Spliceosome [BR:ghi03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    107903391
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 107903391
NCBI-ProteinID: XP_016684907
UniProt: A0A1U8LH91
LinkDB
Position
D02:complement(626324..629047)
AA seq 91 aa
MSTTGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN
GQLKNKYGDAFIRGNNVLYISTSKRTLADGA
NT seq 276 nt   +upstreamnt  +downstreamnt
atgagtacaacaggagagaaagggtcggcaactacgaaaacacctgcagatttcctcaaa
tcgattcgtggtcgaccagttgtcgtgaaactcaattccggtgttgattatagaggtatc
ctagcttgcctagatggatatatgaacatagctatggaacaaacagaagaatatgtcaat
ggacaattaaaaaacaaatacggtgacgcatttattcgcgggaataacgtactttatata
agcacatcaaagaggacattagctgatggtgcatag

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