Gossypium hirsutum (upland cotton): 107903759
Help
Entry
107903759 CDS
T04793
Name
(RefSeq) probable pectate lyase 1
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107903759
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107903759
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
107903759
NCBI-ProteinID:
XP_016685396
UniProt:
A0A1U8J511
LinkDB
All DBs
Position
D05:45231209..45238217
Genome browser
AA seq
427 aa
AA seq
DB search
MAVPMQWAFSSLALLFLFLVGGSIATNTTSRLEDIDPLNEHAVADPEAVAMEVETIIDLN
IRNLTERRKLGFFSCGTGNPIDDCWRCDPNWHKRRKRLAECGIGFGRNAVGGRDGRFYVV
TDHTDDDPVNPKPGTLRHAVIQDRPVWIVFKRDMVIKLKQELIMNSFKTIDGRGANVHIA
NGGCITIQFVTNVIIHGLHIHDCKPTGNAMVRNSPSHFGWRTMADGDAISIFGSSHIWVD
HNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTRDKQMQVTIAYNHFGK
GLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPMNPFAKEVTKRVE
TAESKWKNWNWRSEGDHLVNGAYFTPSGAGASASYARASSLGAKSSSMVRAMTLNAGSLP
CRRGRQC
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atggcggttcctatgcaatgggctttctcttctttagctcttctctttttgtttcttgtt
ggaggatcaattgccaccaacaccacctccaggttagaagatattgatccattgaatgag
catgcggtggctgacccagaggctgttgctatggaggtcgagaccatcattgacttgaat
attcgcaatttgaccgaaaggaggaagttggggttcttttcatgtggaaccggtaacccc
attgatgattgctggcgttgtgaccctaactggcataagcgccgaaagagactagctgag
tgtggcattggttttggaaggaatgcagttggtgggcgtgatgggcgcttctatgtcgtc
actgaccacactgatgatgaccctgttaaccccaaacctgggacattgcgtcatgctgtg
atccaggaccgccctgtctggatcgtgtttaagagggacatggtcattaagttgaagcag
gagctgataatgaacagctttaagaccattgatggtcgtggagctaatgttcatattgct
aatggagggtgtataacaatccaatttgttaccaatgtgattattcatggtcttcatatc
catgactgtaagcctactggtaatgctatggtgagaaactcaccgtctcactttgggtgg
aggacaatggctgatggtgatgcaatctccatctttggttctagccatatttgggttgat
cacaattctctctctaattgtgctgatggtcttgttgatgctgtcatgggctcgaccgcc
attaccatctcaaataaccacttcacccaccataatgaggtgatgttgctaggtcatagt
gactcttacacaagggataagcagatgcaagtgactattgcctataaccatttcggaaag
ggacttatccaaagaatgccaaggtgtagacatgggtatttccatgtggtgaacaatgac
tacactcactgggaaatgtatgcaattggtggaagtgcaaatcctaccatcaacagtcaa
ggtaacagatatgcagctccaatgaacccatttgcaaaggaggtcaccaagagagtggag
actgccgaaagtaagtggaagaactggaactggaggtcagaaggtgaccacttggtcaat
ggtgcctacttcactccatcaggtgctggagcctcagccagttatgccagggcctcaagc
ttaggtgccaagtcctcttccatggttagagccatgactttaaatgctggctcacttcct
tgccgtagaggcaggcagtgctag
DBGET
integrated database retrieval system
