Gossypium hirsutum (upland cotton): 107903981
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Entry
107903981 CDS
T04793
Name
(RefSeq) DNA topoisomerase 2-binding protein 1-A isoform X1
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
107903981
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ghi03032
]
107903981
03400 DNA repair and recombination proteins [BR:
ghi03400
]
107903981
DNA replication proteins [BR:
ghi03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
107903981
DNA repair and recombination proteins [BR:
ghi03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
107903981
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PTCB-BRCT
BRCT
BRCT_2
LIG3_BRCT
TopBP1_BRCT0
ECT2_BRCT0
Motif
Other DBs
NCBI-GeneID:
107903981
NCBI-ProteinID:
XP_016685709
UniProt:
A0A1U8JBV1
LinkDB
All DBs
Position
D03:complement(17179292..17186381)
Genome browser
AA seq
985 aa
AA seq
DB search
MMMTTKAKAFMGSNVFMSRNLVPPEVFDKLHGVLKDNGAQVFLCSDPSRNGPDDFHVISS
FDHEKFEDLRTKGCNLIGPQCVISCANENRALPKQGFSCCLAMDGLKVLASGFDMDEKVK
IEKLVIAMGGVLHTKASLDVSFVIVKNVLAAKYKWALNVLKKPIVTIQWLYQCWSEHRVV
PQESYRVLPFTGLTISVTGIRADERKEIEKLIIQNGGKYSAELTKKCTHLICDVPEGDKY
KVARRWGHVHIIVRKWFDQCIARRACLNEESYPVQGGSASSKKSVSGSLSAQHSQDKFRA
SSVSATSLVVPEFNMSTVPSTGLGDPDLEAAHSQNTPSVLSDAQAIFEEDGGEAPNLKPS
TETKLDGCVANDSQSEDNDLYLSDCKISLVGFEASEMRKLVTMVRRGGASRYMSCNEKLT
HIVVGAPSELEKKEVRSIAASGVIHVVKTSWLEDCDRQKKEIPVHQRHVAYDLLLPKDSA
HSVRGAVTGIINSNQSKSSVPTNSGTGMPSSFGKSLDDKPKINMNGGSCLKATVGSSKQG
LLPTINSTSNFWQKQQSDSVVQNPKNGISSAVFKGKTFCFSVSFPEDRRAEIVEWVDQGG
GQVVEDQVKKNVNFIIECHGVIPSCIADSQITYVSTHWVRSCLEDGCLLDVGRHILYSPL
PCQIPFPGFKNFRFCVSQYEEKDRLLLRNLCFILGAKFVEKLTKKVTHLLCKFTSGPKYE
AACKWGIRSVTSEWIYECLRQNKVVSLDPFCPKEVTAQDQEAGLCTVSQFPTQAAKMIAV
DVPSQFTSQPQGLRTQDLGVKMGSITGDRNDGSRDEAEQSNDHFKRARHLEDDDQNDLLA
SRVHLCEPFLNENSTGNNKLKNAGEAAQVLPDVDTVIDLLEQTSKIHDQKSPERNGCDRS
VFLSDCTGLRQDHTDSHSVIGLSRHWLNRNVRKDEISSHSRDVNAGSLYGGFSETQTESQ
VVGYEEDLSGRQMLIDRVRTRSSMT
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgacgacgaaggcaaaagcgttcatgggatcgaacgtcttcatgtcgcgaaac
ctcgtccctcccgaagtattcgacaagcttcacggcgttctcaaggataacggtgcccaa
gtcttcctctgtagcgacccttctcgcaatggccccgatgatttccacgttatctcctcc
ttcgatcacgagaaatttgaggatcttagaactaaaggctgtaatttgataggtcctcaa
tgtgtgatttcttgtgcaaatgaaaatagagctctacctaaacaaggatttagttgctgt
cttgcaatggacggtctcaaagtgctggcatccggtttcgacatggatgagaaggttaag
attgaaaaattagttatagccatggggggagttttgcatactaaagcatctctagatgtt
agcttcgtcattgtaaagaacgtcttggctgcaaagtataagtgggctttaaatgttctg
aagaaacctattgttactattcaatggttgtatcagtgttggagcgagcaccgtgttgtt
cctcaggagtcatacagggttcttccttttactggattgacaatatctgttaccggaatt
cgtgcagatgagcgaaaggagattgaaaagcttatcatacaaaatggtggaaaatattct
gctgaactcaccaagaagtgcacacatttgatttgtgatgttcctgaaggtgacaagtat
aaagttgcccgaagatggggtcacgttcatatcattgttcggaaatggtttgatcaatgt
attgccagaagagcatgccttaatgaggagtcctatcctgtccaaggtggcagtgcatct
tcaaagaaaagtgtgagtggttccttgtcagcacagcatagtcaagacaagtttagggca
agttcagtgtctgcaacctccttggtggttcctgaatttaatatgtccacagtgccttct
accggattgggagatccagatcttgaagctgctcattctcagaatacaccttctgtgtta
tcagatgctcaggccatttttgaagaggatggtggtgaagcaccaaatttgaagccctct
actgaaacaaagcttgatggttgtgttgccaatgattctcaatctgaagataatgatcta
tacttgtcagattgtaaaatttcacttgtaggctttgaagcttctgaaatgcgtaagctg
gttaccatggtgcgtagaggtggtgcatcccggtatatgtcatgtaatgaaaaattgacg
cacatagttgttggggcaccatctgaattggaaaagaaagaggtacgaagcattgctgct
tcaggtgttatccatgtggtaaagaccagctggcttgaggactgtgatcgtcaaaagaaa
gaaatccccgttcatcagaggcatgttgcatacgacttacttcttcctaaagattctgcg
cactctgtcagaggagcagtgacgggaattatcaattcaaatcaaagtaaatcctcagtt
cctacaaactctggaactggaatgccttcatcatttgggaaaagtctagatgataaacct
aaaatcaacatgaatgggggaagctgtttgaaagctactgtaggatcatccaagcaaggt
ctacttcctacaataaatagtacaagtaatttttggcagaagcagcaatctgactctgta
gtccaaaatcctaagaatgggatttcatcagctgtatttaaggggaaaacattttgtttt
tcagtttcctttcctgaagataggagagctgaaattgttgaatgggtggatcaaggcggt
ggacaggttgttgaggatcaagtgaaaaagaatgtgaattttattattgagtgtcatggt
gtgatacccagttgtattgctgattcccagattacttatgtttctactcactgggtcagg
tcttgtttagaggatggatgcttgctggatgttggaagacatattctctattcgccactt
ccctgtcaaattccatttcctgggttcaaaaacttccgcttttgtgtttcacaatatgaa
gagaaggatagattgctattaagaaatctatgttttattcttggagctaagtttgtggaa
aaacttacaaaaaaggtgactcatttgttgtgtaagtttactagtggaccgaaatatgag
gctgcttgtaaatggggaatacggtcagttacatcagagtggatttatgaatgtttaagg
cagaataaagtagtatctctggatccattttgccctaaagaagttactgctcaagaccaa
gaagcaggattatgcactgtgagccagtttccgactcaagctgctaaaatgattgctgta
gatgttccctctcagtttacaagtcaacctcagggtctgagaacacaagatcttggtgtt
aaaatgggaagcattactggtgatagaaatgatggctctagagatgaggccgaacaatca
aatgatcattttaaaagggcaaggcacttagaagatgatgaccagaatgatctgcttgct
tctcgagtgcatttatgcgagccttttctgaatgaaaattctactggaaacaacaaatta
aaaaatgcaggtgaagctgctcaagttttgcctgatgtagatactgttatagacttactg
gagcaaactagtaagattcatgatcagaagtcaccagagaggaatgggtgtgacagaagt
gtatttttatctgattgtactggccttcgtcaagatcataccgattctcattctgttatt
gggttatctcgacactggttaaaccggaatgtgagaaaagatgaaatcagcagtcattcc
agagatgtgaatgcgggaagcctatatggtggtttcagtgaaacgcaaacagagtctcag
gttgtgggttacgaagaagatttgtcaggcaggcaaatgcttatagaccgagttcggacc
cgaagtagcatgacttga
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