Gossypium hirsutum (upland cotton): 107904158
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Entry
107904158 CDS
T04793
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107904158
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107904158
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
DUF5997
Motif
Other DBs
NCBI-GeneID:
107904158
NCBI-ProteinID:
XP_016685917
UniProt:
A0A1U8J6D5
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Position
D05:31437826..31442298
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AA seq
500 aa
AA seq
DB search
MLPFTCILIICILGPFSSFGRAAFNLSLPHQHPHPESVVHDVQRRLNVSISRRQALSVSQ
KDQCLTGNPIDDCWRCDPNWYNNRQRLADCSIGFGQGTLGGKGGRIYTVVDSSDNDVANP
KPGTLRHAVIQDEPLWIIFSTNMVIKLKHELIFNSFKTVDGRGVTVHVTGNGCITLQYVS
HVIIHNIHVHHCKPSGNADIASSPTHVGWRGRSDGDGISIFSSQKVWIDHCALSYCTDGL
IDAIMGSTGITISNNYFSHHNEVMLLGHDDRHLADSGMQVTIAFNHFGEALVQRMPRCRL
GYIHVVNNDFTAWEMYAIGGSANPTINSQGNRYTAPVDPNAKEVTKRVDTDEREWASWNW
RTEGDLMVNGAYFVPSGADVSPQYAKASSIQPKSAAFIQQLTFTAGVFGESSEETGSYTY
PGYTGNTVPSGTGTTTTGSAGPTDDGNFFGMIFGSGAAPSPTPPALTSMASTFLSLLIIL
ILYSITNQGALPPLLSLLLL
NT seq
1503 nt
NT seq
+upstream
nt +downstream
nt
atgcttcctttcacctgcattctcataatatgtattttaggtccattctcttcatttggt
agagctgccttcaatcttagcctccctcaccaacatcctcaccctgaatctgttgttcat
gatgttcaaaggagattaaatgtgtctatatcaagaagacaagctctatctgtaagccaa
aaagatcaatgcctaaccggaaaccccatcgatgattgctggcggtgcgatcccaactgg
tacaacaaccgccaacgcttagctgactgttctataggttttgggcaaggaaccctcggc
ggaaaaggcggcagaatctacactgtcgtggattcctccgacaacgacgttgctaatccc
aaaccaggcactctccgccacgccgtcatacaagacgaacccctctggatcatcttctca
accaacatggtcatcaagctgaagcacgagctgattttcaactctttcaaaaccgtagac
ggccgtggtgtcaccgttcatgtcaccgggaatgggtgtataacattgcagtatgtctcc
catgttattatacataacatccacgttcaccattgtaaaccatcggggaacgccgacatt
gcttcgtcgccgacgcatgttggatggagaggaagatcggacggtgatgggatctccatt
ttcagttcccagaaagtctggatcgatcattgcgcccttagttactgcactgacggtctt
attgatgctataatgggctccactggaattaccattagtaacaattatttttctcaccat
aatgaagtaatgcttttaggccatgatgacaggcatttggctgattcagggatgcaggtg
acgatagcttttaatcacttcggagaagcattggtgcaaagaatgccgagatgccggtta
gggtatatacatgttgtcaataatgatttcacggcttgggaaatgtatgccatcggcggt
agtgctaaccctaccatcaacagtcaagggaatcgttatactgcaccagtggaccctaat
gctaaagaggtgacaaagagagtggacacggatgagagggaatgggcatcttggaactgg
agaacagaaggggatttaatggtaaatggagcctattttgtgccttccggtgccgacgta
agtcctcaatacgctaaagcttccagcatccagcctaaatccgctgccttcattcagcag
ctcactttcactgccggcgttttcggcgagtctagcgaagagactgggagctatacctat
ccagggtacaccggcaacaccgtgcccagtggcaccggcaccaccactactggcagtgca
ggacccaccgatgatggcaacttctttggaatgatatttgggagcggcgcagcaccatcg
ccaaccccaccagcattaacatcaatggcttcaacatttttgtctcttttaattatttta
attttgtattctattaccaaccaaggtgcgctaccaccattactatcattattattgtta
tag
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