Gossypium hirsutum (upland cotton): 107904228
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Entry
107904228 CDS
T04793
Name
(RefSeq) protein TRANSPARENT TESTA GLABRA 1
KO
K11805
DDB1- and CUL4-associated factor 7
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
107904228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107904228
03036 Chromosome and associated proteins [BR:
ghi03036
]
107904228
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
107904228
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
107904228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
WD40_CDC20-Fz
Beta-prop_WDR5
WD40_Prp19
Beta-prop_CAF1B_HIR1
Beta-prop_WDR3_1st
WD40_WDHD1_1st
WD40
Beta-prop_EIPR1
WD40_Gbeta
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_Aladin
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_EML_2
Beta-prop_WDR41
Beta-prop_WDR3_2nd
MIOS_WD40
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR19_1st
WD40_RFWD3
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
107904228
NCBI-ProteinID:
XP_040966474
UniProt:
Q8LJT0
LinkDB
All DBs
Position
Unknown
AA seq
345 aa
AA seq
DB search
MENSTQESHLRSDNSVTYESAYTVYAMALSSTPSSTNINHQRIALGSFLEDYTNRVDIIS
FDPETLSFKTHPKLAFDHPYPPTKLMFQPNRKSASSSSSCSDLLASTGDFLRLWEVRESS
IEPVTVLNNSKTSEFCAPLTSFDWNDVEPKRIGTSSIDTTCTIWDIEKCVVETQLIAHDK
EVYDIAWGEARVFASVSADGSVRIFDLRDKEHSTIIYESPQPDTPLLRLAWNKQDLKYMA
TIQMDSNKVVILDIRSPTTPVAELERHHASVNAIAWAPQSCKHICSAGDDTQALIWELPT
VAGPNGIDPLCVYSAGYEINQLQWSAAQPDWIAIAFSNKLQLLKV
NT seq
1038 nt
NT seq
+upstream
nt +downstream
nt
atggagaattcaactcaagaatcccacctgagatccgataattcggtaacctacgaatca
gcttacacagtttatgccatggccttatcttccacgccttcctccaccaatatcaaccat
caacgcatcgctctcggcagcttcctcgaagattacactaacagagtcgacataatctca
tttgatccagaaaccctctccttcaagacccacccaaagcttgccttcgaccacccttat
ccacccaccaagctcatgttccaacccaatcgaaaatccgcttcatcctcttcttcttgt
tccgatcttctcgcttcaaccggcgatttcctgcgtctctgggaagttcgagaatcttcc
attgaacctgtcactgttctaaacaatagcaaaaccagcgagttttgtgccccgttaact
tccttcgattggaacgatgttgaacccaagagaattgggacttccagcatcgacacaact
tgcaccatttgggacatcgagaaatgcgtcgttgaaacccaattgatcgctcatgataaa
gaggtttacgacattgcttggggtgaagctagagtttttgcttccgtttccgctgatggg
tccgttaggattttcgatttgagagacaaagaacattccaccatcatttatgaaagtccc
caacccgacacccctttattaagattggcttggaacaagcaagatttgaagtatatggct
accattcaaatggatagcaataaagttgtgattttggatataaggtcacccacaaccccc
gttgctgagttggagcggcatcacgctagtgtcaatgccattgcctgggctcctcagagt
tgtaagcatatttgttccgctggggatgatacccaggctcttatttgggagttgcctacg
gtggcgggacctaatggtatcgatcctctgtgtgtttactctgctggctacgaaattaat
caattacagtggtctgctgcgcaacctgattggattgccattgccttttccaacaaattg
cagcttctcaaagtttga
DBGET
integrated database retrieval system
