Gossypium hirsutum (upland cotton): 107904275
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Entry
107904275 CDS
T04793
Name
(RefSeq) exosome complex component RRP42
KO
K12589
exosome complex component RRP42
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107904275
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107904275
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
107904275
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
107904275
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Spore_YtfJ
Tox-PL-2
Motif
Other DBs
NCBI-GeneID:
107904275
NCBI-ProteinID:
XP_016686083
UniProt:
A0A1U8JBM5
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Position
A05:complement(110480056..110482771)
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AA seq
287 aa
AA seq
DB search
MVGLSVGEKHFIQGGIAQDLRSDGRKRLTYRPIYVETGVIPQAHGSARVRLGATDVIASV
KAELGKPSALQPDKGKIAIYVDCSPTAAPMFEGRGGEELSTELSVALQRCLLGGKSGAGA
GIDPTSLVVVEGKVCWDLYIDGLVISSDGNLLDALAAAIKAALSNTGIPKVDVAAETRSD
EQPEVNISDEEFLQFDTSGIPVIVTLTKVGRHYIVDATSEEESQMSSAVSISVNRKGHIC
GLTKRGGVGLDPSIILDMISVAKHVSEQLINKLDSEIAAAEASEEES
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atggtgggactttctgttggagaaaagcatttcatacaaggtggaattgctcaagacctt
cgttcagatggtcgaaaaaggctaacttaccgacccatatatgttgaaactggagtgatt
cctcaggcacatggttcggctagagttaggcttggtgcaactgatgttattgccagtgtt
aaggctgaacttggaaaaccaagtgcattgcaacctgacaaagggaagattgctatatat
gttgattgtagtccaactgcggcaccaatgtttgagggtagagggggtgaggagttgtca
actgagctatcagttgccttgcaacggtgcctcttgggtggtaaaagtggagcaggagct
ggaattgatccaacatctctggtggttgtggaaggaaaagtgtgttgggatctctatatt
gatggtctcgttattagttcagatgggaatttgctagatgcccttgctgctgccattaag
gctgctttaagcaataccggcatccctaaggtcgatgttgcagcggagacaagaagtgat
gaacaacctgaagtcaacataagtgatgaagagtttctacagtttgacacatctggaatc
cctgtcatagttactctaacaaaggtggggaggcactatatcgttgatgctacatcggaa
gaggaatcacaaatgagctcggctgtttcgatttctgttaaccgaaaaggacacatttgt
gggcttacgaaacgtgggggtgttggcctagacccgagtattattcttgacatgatttct
gtagcaaaacatgtaagtgaacagctaataaacaagttggattctgagattgctgctgct
gaggcaagtgaagaggaatcatga
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