Gossypium hirsutum (upland cotton): 107904534
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Entry
107904534 CDS
T04793
Name
(RefSeq) nuclear pore complex protein NUP98A isoform X3
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107904534
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107904534
03036 Chromosome and associated proteins [BR:
ghi03036
]
107904534
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
107904534
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
107904534
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
107904534
NCBI-ProteinID:
XP_016686425
UniProt:
A0A1U8J7V3
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All DBs
Position
D11:complement(1454233..1461421)
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AA seq
1115 aa
AA seq
DB search
MFGSTSPFGQSSSSPFASQSVFGQTNNANSNPFAPKPSFGSITPFGSQTGGSIFGGTSTG
VFGSAQSSSPFSSTTAFGASSSPAFGSSMPAFGSSSTPAFGSSSSSFGGSSVFGQKPAFG
FGSTTTQSSPFGSTMQQSQPAFGSGIFGSSVPFGSSTPAFGATSTSAFGATSTPAFGATS
ALAFGATSAPAFGGTSTPAFGSMSTPAFGATSTPAFGSTGSPAFGSTGTAFGVSNAPVFG
TGGTFGASSTPAFGTSSTPAFGGSSTPAFGASSSPSFSFGSAFGQSTPAFGSFGATSTPA
FGSTSTPAFGATSTPAFGSTGSPAFGSSGTTFGMSNASVFGTEGTFGASSTPAFGTSSSP
AFGASSTPSFSFGSSPTFGQSTPAFGSSPFGTTAFGAQSSPFGSQSSTPAFGSTSFGQSP
FGGQRGGSRVAPYSSTTEADGGSGTQPAGKLESISAMPVYKDKSHEELRWEDYQLGDKGG
PNPASQPSAGIGFGVSTSPSNPFSTSSTFGQTSANPFSSTSTNPFSLKPPSFNSTGFTTS
ATTSNPFQSTSSSLFGQTSSMTTSIFSSSSTPTFGTGSSLFSSSVTPSFSTSLSIFGTSV
TPATTPTFATGLNFSSSQTSPLFSSTPAIGQTGNAFGQVTSTFGQNTTNFGQTSIFNTPS
AGFGGNMFSSSLSFAPSSSPAAFGSTTPPFSSPFQPAQTSGAFSFSNFGQSQPGGGSSIF
GQSNIGLSYVSSTQSAAVAQPSTIANPYGTLPAMPQISIGRTGAAPSVQYGISSMPVVDK
PAPVRILPLLTSRYLSQRRIRLPTRKYHPNNDSPKIPFFSDDEETPCVPKAGAVFIPREN
PRSLVIRPTKSWPSRASAEKASPLKDASTPPHENGKFSNDGSNAEDKDENPAENGLVKER
IHIIRSNQKANGVHDDYSTEKEDLYMTISGHRAGEAAIVYEHGADIEALMPKLRRFDYFT
EPRIQELAAKERAEPGYCRRVKDFVVGRHGYGSIKFSGETDVRRLDLESLVQFNNREVIV
YLDDSKKPPVGQGLNKPAEVTLLNIKCFDKKTRQQYTEGPRVEKYKNMLKRKAEEQGAEF
LSYDPIKGEWRFKVNHFSTYKLEDGDDDGEDKKHL
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgtttggttcaactagcccttttgggcaatcatcaagtagcccatttgcttcccaatct
gtttttggccagaccaacaatgcaaatagcaatccatttgctccaaaaccttcctttggt
agcattaccccttttggatcacaaacaggtggttcaatatttgggggtacttctactgga
gtgtttggctccgcccaatcttcttctcccttttcctcaacaactgcctttggtgcttca
tcatctccagcttttggaagttccatgcctgcttttggatcttcttctactcctgcattt
ggcagttcatcatcatcttttggtgggtcttctgttttcggtcagaagcctgcatttggc
tttgggtctactactactcaatcaagtccttttggaagcacaatgcaacaatcacaacct
gcatttggtagtggtatatttggttcctctgtaccttttggttccagtactcctgccttc
ggtgccacaagcacctctgcttttggtgccacaagtacccctgcctttggtgccacgagt
gcccttgcttttggtgccacgagtgcccctgcttttggtggcacaagtacccctgccttt
ggttccatgagtactccagcctttggtgccacaagcacccctgcctttggttcaactgga
agtccagcatttgggagcactggaactgcatttggtgtgtccaatgccccagtctttgga
acaggtggcacatttggagcatcaagcacacctgcttttggcacttccagcactcctgca
tttgggggttcgagcactcctgcttttggagcatcttcaagtccatcattcagctttggg
tcagcatttgggcagtcaacaccagcatttggtagctttggtgccacgagcactcctgcc
tttggttccacaagcacccctgcctttggtgctaccagcactccggcctttggttcaact
ggaagtccagcattcgggagcagtggaactacatttggcatgtctaatgcctctgtcttt
ggcacagaaggcacatttggagcatcaagcacacctgcttttggcacttcaagcagtcct
gcttttggagcatcttctactccttccttcagctttgggtctagcccaacttttggccag
tccacaccagcattcggtagtagtccatttggaaccactgcatttggagcccagagttct
ccttttggaagtcaatcttctacaccagcatttggaagcactagctttggccagtcacct
tttgggggtcaacgtgggggaagtagagtagctccgtactcttctactactgaagcagat
ggagggagtggtacacagccagctggaaaattggagtcaatatcagcaatgcctgtttac
aaagataaaagtcacgaggagttgagatgggaggattatcagttaggagataaaggtgga
ccgaatccagcttctcagccttctgcagggattggctttggtgtgtcaacttcaccttca
aatcctttcagcacctcttcaacatttggtcagacatctgcaaatcctttttccagcaca
agtaccaatccatttagtctaaaacctccatcctttaatagtacaggttttacaacctca
gcaactacatcaaatccttttcaatcgacttcatcaagcctttttgggcaaacttcatca
atgacaacttcaatatttagttcatcttccactcctacatttggaactgggtcttctctt
tttagttcatctgtcactccttccttttcaacttcgttatccatttttggcactagtgta
actccggcaacaacgcctacatttgctactggtttaaattttagcagcagtcagacatcc
cccctgttcagttctacccctgcaattgggcagacaggcaatgcttttgggcaggtgacc
tctacatttggacagaatactactaattttggtcaaacaagcattttcaacacaccttcc
gctgggtttggtgggaatatgttttcaagctcactatctttcgctccttctagcagccca
gctgcctttggctcaacaactccccctttttcttctccttttcagccagctcagactagt
ggtgctttcagtttcagcaattttggtcagtcacaaccaggtggtggttcaagcattttt
ggtcagagtaacattggcttgtcgtatgtgtcttctacacagagtgcagctgtagcacaa
ccctcgactattgcaaacccctatggaacactccctgctatgccacaaatctcaattggt
cggactggggctgccccatctgttcaatatggaatttctagcatgcctgttgtggacaaa
cctgctcctgttagaatattgcccttattgacttctcgatacttgtcgcaaaggcggatt
aggttgcctacaaggaaatatcatcctaataatgatagtccaaagattccatttttcagt
gatgatgaagagacaccctgcgtgcctaaggccggtgctgtttttattcctagggaaaac
ccaaggtctctggtcattcgccccacaaaaagttggccgtccagagcttctgcagagaag
gcatcaccattgaaggatgcatccactccgccgcatgagaatggcaaattttctaatgat
ggctccaacgctgaggataaagacgaaaatcctgctgaaaatggccttgtgaaggagcga
attcatatcatcagaagtaaccaaaaggctaatggagtccatgatgattattctactgag
aaagaggacttgtacatgacgatcagtggtcacagagctggtgaagcagctattgtctat
gagcatggggctgacatcgaggctctaatgccaaagctccgccgttttgactactttaca
gaacctcgaatccaagaactagcagcgaaggaaagggctgaaccagggtactgtcgccgt
gtaaaggattttgtggttgggcggcatggttacggaagcatcaaattctcgggtgagacc
gatgtgagacgtcttgatctggagtcccttgtccaattcaacaaccgtgaggtgattgtt
tacttggatgacagcaagaaacctcctgtcggacaaggtcttaataaacctgctgaggta
acacttctcaacattaaatgcttcgataaaaagaccaggcagcagtatacagaagggcca
cgagtcgagaaatacaagaacatgcttaagaggaaggcagaggagcaaggagctgagttt
ctctcctatgatcccatcaaaggagaatggaggttcaaggtcaatcacttcagtacatac
aagttggaagatggagacgatgatggtgaagataaaaagcacttgtaa
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