Gossypium hirsutum (upland cotton): 107904655
Help
Entry
107904655 CDS
T04793
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH3 isoform X2
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107904655
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107904655
03012 Translation factors [BR:
ghi03012
]
107904655
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107904655
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
107904655
Translation factors [BR:
ghi03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
107904655
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
AAA_19
nSTAND3
T2SSE
ATPase
Dicer_dimer
AAA_16
AAA_30
PhoH
AAA_11
Motif
Other DBs
NCBI-GeneID:
107904655
NCBI-ProteinID:
XP_016686590
UniProt:
A0A1U8J8B7
LinkDB
All DBs
Position
D11:complement(500898..509998)
Genome browser
AA seq
914 aa
AA seq
DB search
MESPEGQKMLEFRRSLPAYKERDALLNAISQNQVVVVSGETGCGKTTQLPQYILESEIEA
ARGASCSIICTQPRRISAMAVSERVAAERGEKLGESVGYKVRLEGMKGRDTRLLFCTTGI
LLRRLLVDRDLRGVSHVIVDEIHERGMNEDFLLIVLKDLLPRRPELRLILMSATLNAELF
SSYYGGAPTIHIPGFTYPVRAHFLENILEMSGYRLTPYNQIDDYGQEKMWKMQKQAQSFK
KRKSQLTSAVEDVLEDADFRGCSLRTRESLSCWNPDSIGFNLIEHVLCHIVRKERPGAVL
VFMTGWDDINSLKGQLQAHPLLGDPSKVLLLACHGSMPSSEQRLIFEKPEDGVRKIVLAT
NMAETSITINDVVFVVDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGRVQPGEC
YHLYPKCVYDTFADYQLPELLRTPLQSLCLQIKSLELGGITEFLSRALQPPELLSVQNAV
EYLKIIGALDENENLTVLGCNLSMLPVEPKLGKMLILGAIFNCLDPIMTVVAGLSVRDPF
LMPFDKKDLAETAKAQFAGQEYSDHIAVIRAYEGWKEAEREQSGYEYCWKNFLSAQTLKA
IHSLRKQFFYLLKDAGLVDQNVENCNKWSHDEHLVRAVICAGLFPGICSVVNKEKSIAMK
TMEDGQVLLHSNSVNAEVPKVPYPWLVFNEKVKVNAVFLRDSTGVSDSILLLFGGNISRG
GLDGHLKMLGGYLEFFMKPALAVMYLSVKRELEELIQRKLLDPTLDMHSSNELLSAVRLL
VSEDRCEGRFVFGRQVTLSSKKTATVKTPGKSEADNSKNHLQTVLTRAGHGPPTYKTKQL
KNNQFRSTVIFNGLDFVGQPCSSKKLAEKDAAAQALLWLRGEDHSTSRDIDHASLLLKKS
KSRRKTSVSDAKWS
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atggagtctcctgaaggccaaaagatgcttgaatttcgtagaagcttgcctgcatataaa
gagagagatgcattgctaaatgctatctcacagaatcaggtggttgttgtctctggcgaa
actggttgtggtaaaaccacacaacttcctcagtacatattagaatctgagattgaagct
gctcgtggagcttcctgtagtattatatgtactcagcctagaagaatatctgctatggct
gtttctgaaagagttgctgctgaaagaggggagaaattgggagaatctgtcggctataaa
gtacgccttgagggaatgaaagggagagacactcgcctccttttttgtacaactggcatt
ttacttaggcgactacttgttgacagagatttgagaggtgtaagtcatgttattgttgat
gagattcatgaacgaggaatgaatgaagattttcttcttattgtgttgaaagatctcctt
ccacgtcggccagagttgaggttgattttgatgagtgcaaccttaaatgctgaactcttt
tcttcttactatggtggtgccccaacaatccatattcctggttttacatatcctgtacga
gcacattttctggagaatattctagagatgagtggatacaggttaactccatataatcaa
attgatgattatggtcaagaaaagatgtggaaaatgcagaagcaggcccaatcttttaaa
aagaggaagagtcagctaacttctgctgttgaggatgtgcttgaagatgctgatttcagg
ggatgtagtttacgcacacgagaatctttgtcctgttggaatcctgactcaattggcttc
aatctcattgagcatgttctttgccacatagtgaggaaagagaggcctggtgctgttttg
gttttcatgactggttgggatgacataaattctctaaaaggtcagcttcaggctcatcct
ctcctaggtgaccctagcaaggtgttgttgcttgcatgccatggttccatgcctagctct
gagcagaggttaatatttgaaaagccagaagatggagtgaggaaaatagttctagctact
aatatggctgagactagcatcaccatcaatgatgtggtttttgtggttgattgtggaaag
gcaaaagaaacatcctatgatgcattaaataatactccttgtttgcttccatcttggata
tcaaaggctgctgcccggcaaagaaggggaagagctggtcgtgttcaacctggcgagtgt
taccatctttatcccaaatgtgtttacgatacttttgctgattatcaacttccagagctt
ttaaggacaccattgcagtctttatgtttgcaaatcaaaagtctagagcttggaggtatc
accgagttcctttctagggcattgcagcctccggaacttctgtcggtacaaaatgctgtt
gaatatctgaagattattggagctttagatgaaaacgagaatttgacagtgctaggatgc
aacttgtcaatgcttccggttgagcctaaacttggaaaaatgctgatactgggagctatt
ttcaactgtttggatccaataatgactgttgttgctgggctcagtgtccgtgatccattc
ctgatgccatttgataagaaggatcttgctgaaacggcaaaagcccaattcgctggccag
gaatacagtgatcatattgcagttatccgagcctatgagggttggaaagaagctgaaagg
gagcagtctggttatgagtattgttggaagaattttctttctgcacaaactctcaaggct
attcactctctacgaaagcagttcttctatttgctcaaggatgctggtctagttgatcaa
aatgtagaaaactgcaataagtggagccacgatgaacatcttgtcagggcagttatttgt
gctggcttgtttccagggatatgctctgttgtgaacaaagagaagtcaattgcaatgaaa
acaatggaggatggtcaagttcttttacactcgaattcggtgaatgctgaagttcccaaa
gttccatacccttggctggttttcaatgaaaaggtaaaagtgaatgcagtattcctccgc
gattcaactggtgtttctgattccatactgctcttatttggagggaacatctctagaggt
ggactagatggacatctgaagatgttgggaggatatttggagttcttcatgaaacctgct
ttagctgttatgtatttaagcgtgaaaagagagctagaagaactaattcagaggaaactt
ttggatcctacattagacatgcattctagcaatgagctcctctcggcagtaagattgctg
gtctcagaagatcgatgtgaaggtagatttgtctttggccgtcaggtgacattgtcttca
aagaagacggccactgttaaaacaccaggtaaaagcgaggctgataattcgaagaatcat
ctgcaaacagtacttaccagggctggacatggaccacccacttacaagacaaagcaacta
aagaacaaccagttccgatctacagtcatctttaatgggctggattttgttgggcagcct
tgtagcagcaagaaacttgcagaaaaggatgcagctgctcaggctttactgtggttgagg
ggtgaagaccattcaacttcccgagatattgaccatgcctcattgcttcttaaaaagagc
aaaagccggaggaaaacttcagtcagtgatgctaagtggagttaa
DBGET
integrated database retrieval system
