Gossypium hirsutum (upland cotton): 107904686
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Entry
107904686 CDS
T04793
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase component HRD3A
KO
K14026
SEL1 protein
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
107904686
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Gene cluster
GFIT
Motif
Pfam:
Sel1
Motif
Other DBs
NCBI-GeneID:
107904686
NCBI-ProteinID:
XP_016686624
UniProt:
A0A1U8JEC7
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Position
D11:246511..250802
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AA seq
675 aa
AA seq
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MSRSSCHLFLFLLLFSLFPFPLLARPFVLVLSQDDLKDVQNDDASPLDSDSSLDDDDFGG
THVKPDDELDPGSWRRLFEPPTTLLSPSHDTSLDSYYAAVHKIISASNNGDARLMEEAAA
EIETAANTDGDPHARSVLGFLYGMGMMRERNKAKAFLNHYFAAEGGNAQSKMALAYTYSR
QDMHEKAVKLYAELAEIAVNSFLISKDSPVIEPIRIHNGAEENKEALKKSRGEDDEDFQI
LEYQAQKGNAGAMYKMGLFYYFGLRGLRRDHTKALMWFLKAVDKGEPRSLELLGEIYARG
AGVERNYTKALEWLSLASEHGLYSAYNGMGYLHVKGYGVEKNYTKAKEYFDKAADNEDAG
GHYNLGVMYLKGIGVKRDVKIACKCFIVAANAGQPKAFYQLAKMFRTGVGLKKNLPMATA
LYKLVAERGPWSSLSRWALESYLKGDMGKAFLLYSRMAELGYEIAQSNAAWILDKYGERS
MCMGESGVCTDAERHQRAHSLWWQASEQGNEHAALLIGDAYYYGRGTVRDYERAAEAYIH
AKSQSNAQAMFNLGYMHEHGQGLPFDLHLAKRYYDQALELDPAAKLPVTLALASLWVRKN
YADCFLVHVIDSLPEVYPRVEEWVENVIMEEGNATILTLFVCLLTVLYLRERQRRHAIAA
AGAHEPNEHVVPAAR
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgtctaggtcaagctgccatctcttcctcttcctcctccttttctcccttttccccttt
cccctcctcgcccgccctttcgttctcgttctctcccaagacgacctcaaggatgtccaa
aacgacgacgcttcccctctcgattccgattcttctttggacgacgatgacttcggcggt
actcatgttaagcctgatgacgagctcgatcctggatcttggcgccgtctcttcgagcca
cctactacccttctctccccttctcatgatacttccctcgattcttactacgccgccgtc
cataaaatcatctccgcttccaacaacggagacgccaggttgatggaggaagccgcagct
gagatcgagaccgctgctaatacggacggtgatccgcacgctcgttcggtgttaggcttt
ctgtacgggatggggatgatgcgtgagagaaacaaagctaaagcttttttgaatcattat
ttcgctgccgaaggtggtaatgcccagtccaagatggctttggcttacacttactcgcgt
caagatatgcatgaaaaagctgttaaattatatgctgaactggcagaaatagcggtaaac
agtttcttgatatccaaagattcgccggtaatagaaccgattaggatacacaatggagct
gaggagaacaaggaagctttgaagaaatcaagaggggaagacgatgaagattttcagata
ttggaatatcaagcacagaaagggaatgccggtgctatgtacaaaatgggtcttttttac
tatttcggattgagagggttgcgccgtgatcataccaaggctttgatgtggtttttgaaa
gctgtggataaaggggagcctaggtctcttgaacttcttggtgagatttatgctagagga
gctggagttgaaaggaattataccaaggcacttgagtggctttcacttgcatccgaacat
gggctttattcagcttacaatgggatgggttatttacatgttaaaggctatggtgtggag
aagaactataccaaagcaaaagaatacttcgacaaggctgctgataatgaagatgctggt
gggcactataatttaggagtaatgtaccttaaagggatcggagtgaagagggatgtgaag
attgcttgtaagtgttttattgtggcagccaatgcaggtcaaccaaaggcgttttatcag
ttggctaagatgtttcgtactggtgttgggcttaaaaagaatcttcctatggctactgca
ttatacaagctagttgccgaacggggaccatggagttccctctctagatgggcacttgaa
tcatacctaaaaggtgacatgggcaaagcattcctcttgtattctaggatggctgagcta
ggttacgagatagcacagagtaatgctgcatggatccttgacaagtatggtgagcgcagc
atgtgcatgggtgaatctggggtttgcacagatgcagaaaggcatcaacgtgctcattct
ttgtggtggcaagcttctgagcagggtaacgaacatgcagcattacttattggggatgca
tattactatggcagaggaactgtgagggattatgagcgtgcagctgaagcttacatacat
gcaaaatcccaatcgaatgctcaagctatgttcaacctgggatacatgcatgagcatggc
caaggacttccttttgacctccatcttgccaagcggtactatgatcaggcattagagcta
gatcctgcagcaaagttgcctgtcacactggcactggcaagtttgtgggtacgaaagaac
tatgctgactgtttcctggtccacgtaattgattccctgccggaagtttatcctagagtt
gaagaatgggtggagaatgtgatcatggaggaaggaaatgcaacaatattgacactattt
gtctgtctactcactgttctataccttcgtgagcgacaacgcaggcatgctattgctgct
gcgggggcacacgaacctaatgagcatgttgtacctgctgcacgctaa
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