Gossypium hirsutum (upland cotton): 107904762
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Entry
107904762 CDS
T04793
Name
(RefSeq) serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform
KO
K04354
serine/threonine-protein phosphatase 2A regulatory subunit B
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107904762
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
ghi01009
]
107904762
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107904762
03036 Chromosome and associated proteins [BR:
ghi03036
]
107904762
Protein phosphatases and associated proteins [BR:
ghi01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
107904762
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
107904762
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
107904762
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
WDR55
ANAPC4_WD40
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
TFIIIC_delta
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
107904762
NCBI-ProteinID:
XP_040939793
LinkDB
All DBs
Position
A12:complement(109075988..109081706)
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AA seq
503 aa
AA seq
DB search
MNPTTRRHLEWKFSQVFGERSPDDEIQDADRISTVEFDKSGNYVAVGDRGGRIVIFETKD
GKNTADQHYSRNQLEQLDYVSLNHPEYRYKTEFQSHEPEFDYLKSLEIEEKINKLKWCTS
LSGSLFILSTNDKTIKLWKVKDRKVKKAREIDSPHQLLSSENTLLSEKSFMNEQGIPSFA
NGNHVESGVNSIFPSQELRSKIANYEDTAYARCRRVYAHAHDFNINSISNNSDGETFISA
DDLRINLWNLEVSNQSFNIIDMKPSNMEELTEVITSAEFHPIHCNLLAYSSSRGFIRLVD
MRQSALCDYSARIFQDEECHGSRSFLTEIVASITDIKFPVDGRHILSRDYMNLKLWDMHM
DSSPVATFKIHEHLRPKLCDLYNNDSIFDKFECCLSGDGLHFATGSYSNLLRIFFHGGGS
DEGATIEASKDPNSIKNRKPLPRARRSSLSNLTRGFYKQGHESTSVVDEYSLNSSSKLQH
LAWHPCTYLIACASGNSLFFYHA
NT seq
1512 nt
NT seq
+upstream
nt +downstream
nt
atgaatccaaccacgcgccgacatttggagtggaagttctctcaagtcttcggcgaaaga
agccccgatgacgaaattcaagacgctgatagaatatcgacggttgaatttgacaagagt
ggcaattacgttgctgttggagatcgaggcggtcggatcgtgatattcgagacgaaggat
ggaaaaaatacagccgaccagcactattcccgaaatcaactggagcagttggattatgtc
tctttaaaccaccctgaatatcgatataaaactgaattccagagtcatgaacctgagttc
gattatttgaagagcctggagattgaagagaagatcaacaaactcaaatggtgtacaagt
ctaagtgggtcactctttatcctttcaacgaatgataagacaattaaactgtggaaggta
aaagatagaaaggtgaagaaagccagggaaattgattctcctcatcaattgctctcttca
gaaaatactcttctgtctgaaaagagttttatgaatgagcaaggcataccatcttttgct
aatggcaatcatgtagaaagtggagttaacagtattttcccatctcaagaactgcgttct
aagattgccaactatgaagacactgcttatgcaagatgtagaagggtgtatgctcatgct
catgattttaatatcaactcaatttcaaataatagtgatggtgagacgtttatatctgca
gatgatctcaggataaacttgtggaaccttgaagttagtaatcagtcatttaatatcatt
gacatgaagccatcaaatatggaggagcttactgaggtcataacatcagctgaattccat
ccaattcattgtaacctgcttgcatatagcagctcaagaggctttattcgtctagttgac
atgcggcaatctgcattgtgtgattacagtgcaaggatatttcaggatgaagaatgtcat
gggtcacgatcattccttactgagattgttgcttccataactgatataaagtttccagtt
gatggacgtcacatcttaagccgtgactacatgaaccttaagctatgggatatgcacatg
gattcttcaccagttgctacattcaaaattcacgaacacttacgcccgaagttatgcgat
ttgtataacaatgactccatatttgataaatttgagtgctgcctcagtggagatggactt
cattttgcaactggatcttatagtaatctcttacgaatcttctttcatggtggtgggagt
gacgagggggctacgatagaagctagcaaagatccgaacagtattaaaaataggaagcca
cttccaagggcaagaagatcatctctaagtaaccttacccgcgggttttacaaacaaggt
cacgaaagcacaagcgttgttgatgaatattcgttgaactcgagttctaagttgcaacat
ctcgcatggcatccatgtacatacttgattgcttgtgcttccggtaatagcttgtttttc
taccatgcttag
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