Gossypium hirsutum (upland cotton): 107905062
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Entry
107905062 CDS
T04793
Name
(RefSeq) protein ALTERED SEED GERMINATION 2
KO
K11807
WD and tetratricopeptide repeats protein 1
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107905062
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
107905062
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_TEP1_2nd
EIF3I
WDR55
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_WDR35_TULP_N
Beta-prop_EML
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_IFT122_1st
WDR90_beta-prop_4th
ANAPC3
TPR_2
TPR_1
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
107905062
NCBI-ProteinID:
XP_016687115
UniProt:
A0A1U8J9Y3
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Position
D05:20292289..20302637
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AA seq
757 aa
AA seq
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MEQWPFHDGNVHNLLDNRRIDFGHDVGHSLQMHSSLIRRLSMEQELEGHQGCVNAVAWNS
NGSLLISGSDDALINIWSYSGRKLLHSIETGHSANIFCTKFIPESSDELVASGAGDAEVR
LFNLSRLNGRGFNDGAITPSALYQCHTRRVKKLAFEVGNPNMVWSASEDGTLRQHDFREG
TSCPPAGSSHQECRNVLLDLRYGAKRSLADPPRLTLALKSCDISSTRPHLLLVGGNDAFA
RLYDRRMLPPLTSCRKRMLPPTCVNYFCPMHLSDRGRSSLHLTHVTFSPNGEEVLLSYSG
EHVYLMDVNHASGSSMQYTSGDASKLMTFTPVLNKLEHRPPLSGVFQNGLRSRGKTAAGI
EKCRMLVEIAKRSLDNGTNIFHAIEACNEVLDGHGIDIGPTLRLECFCTRAALWLKRKWK
NDAHMAIRDCHNARRIDSSSFRAHYCMAEALEQLGKHKEALDFAVAAQYLSPYDMASEKV
ENIKKHLAAAEAEKSNKASDGSHKGEPRTGRVLSLSDILYRSEANSDALQDGPRSEREDS
DFDEELELDFETLISGDEGRDVESNIFHGSLNLRIHRRGDSTRETGACGSPSSSSQNGVA
YQPEAVIDMKRRYAGHCNVGTDIKQASFLGQRGEFVASGSDDGRWFIWEKQTGKLIKMLL
GDGVVVNCVQSHPFDCFVATSGIDNTIKLWTPSAAVPSMAAGGSAGPEAANVLEAMESNQ
QKLCCNREAFLSFELLERFRMHDFSEGSLQPFECAQT
NT seq
2274 nt
NT seq
+upstream
nt +downstream
nt
atggagcagtggccgttccacgacggcaacgtgcacaatctactcgacaacaggcgcatc
gactttggccacgatgttggtcatagtttgcagatgcattcgtctctgattcgtaggctg
tcaatggaacaagaattggagggacatcagggctgtgtaaatgctgtggcttggaattca
aatggttcacttttgatttctggttctgatgatgcactgataaatatttggagctactct
ggtcgaaagcttttgcattctatagagactggtcattctgctaacatattctgtacaaaa
ttcattcctgaatcttctgatgagcttgtagcctctggagctggggatgcagaggttcga
ttatttaacttgtcccgcttaaatggccgagggttcaatgatggtgctattactccgtca
gcactctatcagtgtcacacaagaagagttaaaaaattggcgtttgaagttggaaacccc
aatatggtatggagtgctagtgaggatggaactctgagacagcatgactttcgagagggc
acttcctgtcctccagctggatcttctcaccaagaatgtcgcaatgttctacttgactta
cgttatggggcaaagaggtcactagctgatcctcctaggcttactctggccttgaaatca
tgtgatatcagttctactagacctcatttactccttgttggtgggaatgatgcatttgcc
cggctatatgatagaaggatgctgccaccattgacctcctgccggaaaagaatgttacca
cctacttgtgttaattatttctgcccaatgcatctctctgaccgtggacgttcaagtttg
cacttaactcatgttaccttcagccctaatggagaagaggttcttcttagctatagtggg
gagcatgtctatctaatggacgtaaatcatgctagtgggagttcaatgcaatatacctca
ggagatgcttcaaaattgatgaccttcactcctgtactaaataaactagagcaccgacca
cctctttccggcgtcttccaaaatggtctccggagtagaggcaaaactgctgctggaatt
gaaaaatgcaggatgttggttgaaattgctaagagatcattagacaatgggacaaatatt
tttcatgcaattgaggcatgcaatgaagtcttggatggacatggtattgatattgggccc
acactcaggcttgaatgcttttgtacacgtgctgccttgtggcttaagcggaagtggaaa
aacgatgcccacatggccattagagattgccataatgctcgaagaatagatagttcttcc
tttagagctcattattgtatggcggaggctttagaacagttgggaaagcataaagaagca
ttagactttgctgttgcagcacaatatttatctccatatgatatggcctctgagaaagtg
gagaacattaaaaaacatcttgctgctgctgaggctgaaaaaagtaacaaggcaagtgat
ggatcacataagggtgaacctcgaactggaagggtattgtcgttgagtgacatactatat
cgctcagaagctaacagtgatgctttacaagatggtccaagatctgaaagagaagactct
gattttgatgaggagctggaattagattttgaaactttaatatcaggtgatgaagggcgt
gatgttgaatccaacatatttcatggaagtttaaatcttagaattcatcgaagaggtgat
tcaactagagaaactggtgcatgtggatctccttcctcgtcatcacaaaatggagtggct
tatcagcccgaggcggtaattgatatgaagcggagatatgctgggcactgcaatgttgga
actgacatcaagcaggcgagtttccttggtcagagaggtgaatttgttgctagcggcagt
gatgatggaaggtggtttatttgggagaagcagactggtaaattgataaaaatgcttctt
ggagatggcgttgttgtaaactgtgttcagagccatccatttgattgctttgtggcaact
agtggtattgacaacacaataaagttatggactccaagtgctgctgtcccatcaatggct
gctggtgggtcagcagggccagaagctgcgaatgtgttagaagcaatggaaagtaatcaa
cagaaattatgttgtaatcgtgaagctttcttgtcctttgaacttttggagcgatttcgg
atgcatgacttttctgaaggatccttgcaaccttttgagtgtgcacagacctag
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