Gossypium hirsutum (upland cotton): 107905111
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Entry
107905111 CDS
T04793
Name
(RefSeq) cryptochrome-1 isoform X1
KO
K12118
cryptochrome 1
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
107905111
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GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Cryptochrome_C
Motif
Other DBs
NCBI-GeneID:
107905111
NCBI-ProteinID:
XP_016687174
UniProt:
A0A1U8JA18
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Position
D05:complement(20751848..20756554)
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AA seq
682 aa
AA seq
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MSGSACSIVWFRRDLRVEDNPALAAGVRAGAVVAVFVWAPEEEGHYYPGRVSRWWLKHSL
AHLDSSLRSLGTCLIAKRSSDSVSSLLEVVKSTGATQLFFNHLYDPISLVRDHRAKEVLT
AHGVAVRSFNADLLYEPWDVNDAQGRPFTTFSSFWERCLSMPYDPEAPLLPPKRIISGDV
TTCHSDELVFEDESEKGSNALLARAWSPGWSNADKALTTFINGPLIEYSKNRRKADSATT
SFLSPHLHFGEVSVRKVFHLVRIKQVLWANEGNKAGEESVNLFLKSIGLREFSRYLSFNH
PYSHERPLLGHLKFFPWVVDEGYFKAWRQGRTGYPLVDAGMRELWATGWLHDRIRVVVSS
FFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGTLLDGREFDLIDNPQFEGYKFD
PHGEYVRRWLPELARLPTDWIHHPWNAPESVLQAAGIELGSNYPLPIVGIDAAKDRLQEA
LSVMWQQEAASRAAIENGTEEGLGDSSESVPFAFPQDIQMEENVEPARNDAPATTRRYED
QMVPSMTSSLVRGIHEEASSDLRTSTEDSRAEVPRNVNIHQEPQRDSLNQGIQLTARNNN
TFRQFNLPMGLGNAEDSTADSSTSSSRRERDGGVVPVWSPPASSYSEQFIGDENDIGTSS
SYLPRHPQSHQIVNWRRLSQTG
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgtcaggtagtgcttgcagcatagtttggttcaggagggatctgagagttgaagataat
cctgcacttgcagctggtgttagagctggcgctgttgttgcggtttttgtatgggcacct
gaagaagaaggccattattaccctggaagggtgtcaaggtggtggctgaagcacagtttg
gctcaccttgattcttctttgaggagccttggtacttgtctcatcgctaagagatcttct
gatagtgtttcctctctgcttgaggttgttaaatctactggtgctactcagctcttcttc
aatcacttgtatgatcctatatcactggttagggatcatcgggcaaaggaggtattaaca
gcccatggtgtagcagttcgatcgttcaatgcagatttactttatgaaccctgggatgta
aatgatgctcaaggacgccctttcactactttttcttctttctgggaaagatgcctgagc
atgccctatgaccctgaggctccacttcttcctcctaagagaatcatttcaggcgatgtg
acaacttgccattcggatgaattggtgtttgaagatgaatcagagaagggaagcaatgcg
cttttagctcgagcatggtcacctggttggagtaatgctgataaggctttgaccacattc
attaatggacctctaattgagtactctaagaatagaagaaaggctgatagtgccaccacc
tcatttctctctccccacttgcactttggggaggtgagcgtcagaaaagtctttcatctt
gtccgcatcaagcaggttctatgggccaatgaagggaataaagctggtgaggagagtgtt
aacttgtttctcaagtcaattggtctgagggaattttcaagatacttgagttttaaccat
ccttacagccatgaaaggcctcttcttgggcatcttaagtttttcccttgggtagtggat
gagggctattttaaggcatggagacaaggtagaactggttatccgttggtggatgctggc
atgagagagttgtgggccactggctggctacatgaccggataagagtcgtagtttcaagt
ttctttgtaaaggttctgcagcttccatggagatggggtatgaagtacttttgggatacc
ctattagatgcagatttagagagtgatgctcttggttggcagtatatatccggtactctt
ctggatggccgtgagtttgacctcatagataatccacagtttgagggttacaaatttgac
ccacatggagaatatgtccgaaggtggctccctgaacttgcaagattgccaacagattgg
attcaccatccatggaatgctcctgaatctgtactccaagctgctggaattgagctcgga
tcaaattaccctcttcctattgtaggaatagatgctgcaaaagataggttgcaagaagca
ctttcggtgatgtggcaacaagaagctgcttcaagagctgcaattgagaatggaactgaa
gaaggccttggagactctagtgaatcagtgccatttgccttccctcaagacatacaaatg
gaggaaaatgttgaaccagcaaggaacgatgctccagctacaactcggcgatacgaagat
cagatggttcctagcatgacttcttctttggtgagaggcatacatgaagaagcttcttcg
gatcttagaacttcaacagaagatagcagagcagaagttccaagaaacgttaatatacat
caagaaccacaaagagactcattaaaccagggaattcagctaacagctcgtaacaacaac
acttttcggcaatttaatctcccaatggggttgggaaatgctgaggattccacagcagat
tcatctactagcagtagtaggagagaaagggatggcggagttgttccagtttggtctcct
ccagcttctagttattcagagcagttcataggtgatgaaaacgatattggtacgagctca
tcttatttaccaaggcatccacagtcccaccaaatagtaaactggaggcgtttatctcaa
actggataa
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