Gossypium hirsutum (upland cotton): 107905134
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Entry
107905134 CDS
T04793
Name
(RefSeq) probable rhamnogalacturonate lyase B isoform X1
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
107905134
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
107905134
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Y_Y_Y
Motif
Other DBs
NCBI-GeneID:
107905134
NCBI-ProteinID:
XP_016687199
UniProt:
A0A1U8JFZ8
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Position
D05:19877630..19883784
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AA seq
675 aa
AA seq
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MTSTLRRIIDCFSDCSGCKTCKGNARQDMLNMNQDTNCAPMLTQGVRLHIQDRYVVMDNG
IVQVSLSKPGGIVTGIRYNGIDNLLEVRNKETNRGYWDLHWNEIGGKGIFDVIQGTSYRV
IVENEEQVEISFTRTWNHSLEGKYIPLNIDKRFIMLRGSSGFYSYAIYEHFREWPGFELG
ETRITFKLRKDKFQYMAVADNRQRYMPFPDDRSNGRGIPLAYPEAVLLVNPLDQRLTGEV
DDKYQYSCENKDLRVHGWICFDPPVGFWQITPSDEFRSGGPLKQNLSSHVGPTTLAMFLS
SHYAGKYMVPQFEAGEPWKKVFGPIFMYFNSAAYGNDPLFLWEDAKIKMMVEVQSWPYSF
PASEDFPKSEQRGNANGRILIQDRYISNDCVIASGAYVGLAPPGDAGSWQMESKNYQFWT
QANENGFFSIRNIRPGDYNLYAWVPGFIGDYRHEAVITIISGCNIEMGDVIYEPPRDGPT
LWEIGIPDRSAAEFYVPDPDPKYINRLFVNHTDRFRQYGLWERYTELYPEGDLVYKIGVS
DYRKDWFFAQVVRKIGDNAYQGTTWKIKFELDNVDRNGIYKLRVALASATLAELQVRVND
PNSNRPLFTTGLIGRDNAIARLGIHGIYKLYNVDIPGTRFVKGENTIFLKQPRCNSPFQG
FMYDYIRLEGPPTPC
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgacgagcacactgcggagaatcatagattgtttcagtgactgtagtggctgtaaaaca
tgtaaaggaaatgcaaggcaagatatgttgaacatgaatcaggatacaaattgtgcccca
atgctgactcagggagtccggctgcatattcaagaccgttatgttgtgatggataatggc
atagttcaagtctcactatcaaaaccagggggtattgttacgggaatacggtataatggg
attgacaatttgcttgaagttcgaaacaaggaaactaatagagggtactgggacctgcac
tggaatgaaataggaggcaagggaatatttgatgtgatccaaggaacaagttatagagtt
atagtggaaaatgaggaacaagttgagatctcattcacaagaacttggaatcactccctg
gagggaaagtacattcccctaaatattgataaaaggtttataatgcttcgtggttcatct
ggcttttactcctatgccatctatgagcatttcagggaatggcctggttttgagcttgga
gaaaccagaattactttcaagctcagaaaagacaagtttcaatacatggctgtagcagat
aacaggcaaagatacatgcccttccctgatgaccgatctaatggacgaggcatacctttg
gcttatccagaagcagtcctacttgtcaatcccctagatcagaggctaacaggagaggtg
gatgacaagtaccagtattcatgtgagaataaagatcttcgggttcatggttggatctgc
tttgatccacctgttgggttctggcaaatcacaccaagtgacgagtttagatctggtgga
cctcttaaacagaacctaagctcacatgtaggacccaccactctggctatgtttcttagt
tcacattatgctgggaaatatatggttccacaatttgaagctggggagccatggaagaaa
gtttttggccctatttttatgtattttaattccgcagcctacggaaatgacccacttttt
ctgtgggaggatgctaagatcaagatgatggttgaagttcaaagctggccatacagtttc
cctgcttcggaggatttcccaaagtctgaacaacggggtaatgctaatggcagaatatta
atccaagacaggtatatcagcaatgactgcgtaatagctagtggtgcatatgttggcttg
gctcctccaggagacgcaggatcatggcaaatggaaagcaagaactatcaattctggacc
caagcaaatgagaatggctttttctctattagaaatatacgccctggtgactataatctg
tatgcatgggtccctgggtttattggagattaccgacacgaagctgtcattaccataatc
tcaggttgtaacattgaaatgggtgatgtgatatatgaacctccaagagatggaccaaca
ttgtgggaaataggcatccctgatcggtcagctgcggagttctatgttcctgatcctgat
ccgaagtatatcaataggctttttgtcaaccatactgacaggtttaggcagtacgggttg
tgggagagatatacagaactatatcctgaaggagacttggtttacaaaattggtgttagt
gactacaggaaagattggttctttgcacaggtggtcaggaagataggcgataatgcatat
caaggaactacatggaaaatcaagtttgaacttgataatgttgatcggaatggtatctac
aaattgcgagtggcacttgcatcagctactctagctgaattgcaggttcgggttaacgac
ccaaattcaaatcggcctctgtttacaactggactgatagggagggacaatgcaatagcg
agactcgggattcatggaatctacaagctgtacaatgtggacatacctggtactcgattt
gttaaaggggaaaataccatcttcttgaaacaaccaagatgcaacagtcctttccaagga
ttcatgtatgactacatccgtttagaaggtcccccaactccatgttaa
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