Gossypium hirsutum (upland cotton): 107905227
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Entry
107905227 CDS
T04793
Name
(RefSeq) SWI/SNF complex subunit SWI3C
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107905227
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107905227
03036 Chromosome and associated proteins [BR:
ghi03036
]
107905227
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
107905227
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
107905227
PBAF complex
107905227
GBAF(ncBAF) complex
107905227
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
ZZ
DUF7685
CLP1_P
Zn_ribbon_2
DUF3306
Motif
Other DBs
NCBI-GeneID:
107905227
NCBI-ProteinID:
XP_016687314
UniProt:
A0A1U8JGB0
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Position
D05:26689504..26696292
Genome browser
AA seq
773 aa
AA seq
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MPASSPSDGRGRWKRRKRDRRPKHLQEDNDVPEEDVEEEDNNNEDIDNHRDNNSGDDAGG
GFRDPSLAGSSECEVLADGGVRISEFPPVVKRTVNRPHGSVMAIVAAERAGLVGDSKGHQ
QVALAVLENVSYGQLQAVSTEAPIVEPEKYVITPPPIMEGRGVVKRFGSRVHILPMHSEW
FSPASVHRLERQVVPHFFSGKSPEHMPEKYMECRNHIVAKYMDNPLKRITVSDCQGLIDG
ISNEDLTRIVRFLDHWGIINYCAAAPSHEPWSAGSYLREEPNGDVHVPSAALKSIDSLIK
FDKPKCRLKAADVYSSLSCHADISDLDNRIRECLDENNCTSCSQPVATSYYQSQKEVDVL
LCSDCFHDGRFVSGHSSIDFVRVDSTKDYGDLDGDSWNNQETLLLLEAMEIYNENWNEIA
EHVGTKSKAQCILHFVRLPMEDGLLENLEVPSMPKSTIVANGDSQRLHSNMNGSLPGPSL
QDADYQSKVPFENSGNPVMAMVAFLASAVGPRIAAACAHASLAALAEDVDKEGSGHGNRM
NMESVHSREGGLHGSVHQKENSAIHSFGQNEAEDHPLSAEKVKAAAKAGLAAAAMKAKLF
ADHEEREIQRLSANIINHQLKRLELKLKQFAEVETLLMKECEQVEKTRQRFAAERARIVS
AQFGTTGVASQMSVPVISSPMVNNIGNNRQQVLSASPSTPSNSGYVNNQPVHPHMPFMQR
QPMFPMGPRMPLTAMQASTSAPPNVMFNSRGNAQPTLNHPLMRSVSGTGSGLG
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atgccagcttcttctccttcagatggtcgaggtcggtggaagcggcggaagcgagaccgg
agacccaagcatctccaagaagataacgatgttccggaggaagatgtagaagaggaagat
aacaacaacgaggacatcgataaccaccgcgataacaattccggggacgatgccggaggg
ggatttagggatccgtctttggcggggtccagcgaatgtgaggttctggctgatggtgga
gttcgcatctcggagttcccccccgtggtcaagcggactgtgaaccgtcctcacggttct
gtgatggcgatcgtggcggctgagcgggccggtttggttggggatagcaagggccaccag
caggtggctctggcggttttggagaacgtttcgtacgggcagttacaggcggtttcgact
gaagctcccattgttgaaccggagaagtatgtgattacacctcctccgataatggagggg
cgtggcgttgttaagaggtttgggagtagggttcatatcctgccaatgcattcagagtgg
ttctcaccagcctccgtgcatcgactagaaagacaagttgtgccacattttttctctgga
aaatcacctgaacatatgccggaaaaatatatggaatgtagaaaccacattgttgccaag
tatatggataatccattgaagagaattacagtttctgattgccagggattgatagatgga
atcagtaatgaggatttaactcgaattgttcggtttcttgatcactggggaatcatcaat
tattgtgcagctgcaccaagtcatgagccttggagtgctgggtcctacttaagggaggag
ccaaatggcgatgttcatgtgccatcggctgcattaaagtctattgatagcttgatcaaa
ttcgacaagccaaaatgtaggctcaaggcagctgatgtttattcatcattgtcatgtcat
gctgacatctctgacttggacaatagaatacgagagtgcctagatgaaaacaattgcact
tcatgttctcagcccgttgccacttcatattatcagtcacagaaggaggttgatgtactg
ctgtgctctgattgcttccatgatgggagatttgtttctggtcattcaagcatagatttt
gttagagtagattcaacaaaagattatggggacctagatggagatagttggaacaaccag
gaaactttactgttgcttgaggcaatggaaatttacaatgagaactggaatgaaatagct
gagcatgtgggcactaagtcaaaagcacaatgcatacttcattttgtacgtctacccatg
gaggatggcctattggaaaatttggaagttccgagcatgcccaagtcaacaattgttgca
aacggagacagccaaagattacactcaaacatgaatgggagtctaccagggcccagcctt
caagatgcggattatcaaagcaaggttccttttgagaattctgggaatccagttatggct
atggttgcttttctggcatctgctgttggaccaagaattgctgctgcctgtgcccatgca
tccttggcagcattggctgaagatgtagataaggaaggttcgggacatggtaataggatg
aatatggagagtgtacatagtagagaaggtggtttacatggttccgttcatcaaaaagag
aactcagcaatacattcatttggtcaaaatgaggcagaggatcatccactatctgctgaa
aaagttaaagctgctgccaaagctggccttgcagctgcagctatgaaggcaaaactgttt
gcggaccacgaggaacgagaaattcaaaggttatcagccaatatcataaatcatcagttg
aagagattggagctgaagcttaagcagtttgcagaagttgaaacgttactcatgaaagaa
tgtgaacaagtggagaaaacaaggcaaaggtttgctgctgagagggctcgaattgtatca
gctcaattcggaaccaccggagtcgcttcacaaatgagtgtacctgtgatttcttctccc
atggttaataacattggcaacaacaggcaacaggtattgtcagcctcaccttcaacgcca
agcaattctggatatgttaacaaccaaccagtacatccccatatgccattcatgcaacgc
caaccaatgtttcctatgggtccgaggatgccccttacagccatgcaagcatccacatca
gctcctcctaatgtcatgttcaactcccgagggaatgcacaaccaactcttaaccatcca
ctaatgaggtcggtttccgggactggatctggtctaggttga
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