Gossypium hirsutum (upland cotton): 107905323
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Entry
107905323 CDS
T04793
Name
(RefSeq) probable pectate lyase 12
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi00040
Pentose and glucuronate interconversions
ghi01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
107905323
Enzymes [BR:
ghi01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
107905323
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
107905323
NCBI-ProteinID:
XP_016687443
UniProt:
A0A1U8JFE2
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All DBs
Position
D01:63269677..63274208
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AA seq
481 aa
AA seq
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MLPINCIVLFFLLSSFFPFTISTFNLTFPIPHPNPNEVAQEVQRRVNASISRRETLQTTQ
KDISSCLTGNPIDDCWKCDPDWPNNRQRLADCAIGFGQYAKGGKGGEYYIVTDSSDDDAV
TPKPGTLRYAVIQEEPLWIVFPSNMHVKLKQELIFNSYKTLDGRGANVHITGGGCITLQY
ISNVIIHNIHIHHCYQSGEANVRSSPTHFGWRTESDGDGISIFGAKDIWIDHCSLSHCKD
GLIDAVMGSTGITISNNFFSHHNEVMLLGHSDEYEPDSGMQVTIAFNHFGEKLVQRMPRC
RRGYIHVVNNDFTQWEMYAIGGSGNPTINSQGNRYTAPTNPNAKQVTKRVDTDEGDWKGW
NWRSEGDVMVNGAFFVASGEGVEFKYEKAYSVEPKSAVLIDQLTMHSGVLGVGGRDNNLG
KWSSGVNGDGSDFGSGEDEDDDYSDDMSGSNIPFSTAFLPLFIAMSSFLLLCFEPITSPM
L
NT seq
1446 nt
NT seq
+upstream
nt +downstream
nt
atgttgcccatcaactgcattgtcttgttcttcctcctctcctcattttttcccttcact
atatccacattcaacctcacctttcccatcccacatcccaatcccaacgaagttgctcaa
gaagttcaaaggagagtaaatgcttcgatttcaaggagggaaaccttacaaacaacccaa
aaagatatatccagttgtttaacaggtaaccccattgatgattgttggaaatgtgaccct
gattggcctaacaatcgacaacggttagccgattgtgcgatcggtttcggtcaatacgct
aagggaggcaaaggtggtgagtattacatcgtgacggattcgtccgatgacgatgccgtg
acaccaaagccaggaacacttaggtatgcagtgatacaagaagagccattgtggattgtg
ttccctagtaatatgcacgttaagctcaaacaagaacttatatttaatagctataagaca
ttggatggacgtggggctaatgtgcatattaccggcggtgggtgtattactttgcaatat
atcagcaatgtcattatccataatatacacatccaccattgttatcaatcaggtgaggca
aatgtaagatcaagtccaacacatttcgggtggagaacagaatcagatggtgatgggatc
tccatctttggagcaaaagacatatggatagatcattgctccttatcacattgcaaagat
gggttgattgatgcagtgatgggatcaacagggatcaccatatcaaacaatttcttctct
catcacaatgaagtgatgttgttgggtcatagtgatgagtatgagcctgattcagggatg
caagtcaccattgcctttaaccatttcggtgaaaagctggtccaaagaatgcctaggtgc
cgacgagggtacattcatgtggttaataatgatttcactcaatgggagatgtatgctatt
ggtggtagtggaaaccccaccattaatagccaagggaaccgttatactgcccctactaat
cccaatgccaaacaggtaacaaagagagtggacacagatgaaggagattggaaagggtgg
aattggagatcagaaggtgatgtaatggtgaatggagctttctttgttgcctccggtgaa
ggtgttgagtttaagtatgaaaaagcttatagtgttgagcctaaatcagctgtcctcatt
gaccaactcaccatgcactccggtgttcttggagttggcggcagggacaacaatttgggg
aagtggagcagcggagtcaacggcgatggaagcgatttcggctcgggtgaagacgaagac
gatgactattccgatgacatgtcgggaagcaacataccgttttcaactgcatttttacct
cttttcattgcaatgtcaagctttttgttgttgtgttttgaacctattacatcacccatg
ttgtga
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