Gossypium hirsutum (upland cotton): 107905525
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Entry
107905525 CDS
T04793
Name
(RefSeq) vacuolar protein sorting-associated protein 35B isoform X1
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
107905525
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ghi04131
]
107905525
Membrane trafficking [BR:
ghi04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
107905525
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
FliS
Motif
Other DBs
NCBI-GeneID:
107905525
NCBI-ProteinID:
XP_016687674
UniProt:
A0A1U8JH87
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Position
D05:16582891..16589674
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AA seq
785 aa
AA seq
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MLLIGAEDEEKWLAEGIAGVQHNAFYLHRALDSNNLRDALKYSAQMLSELRTSKLSPQKY
YELYMRAFDELRILEMFFKDESKHGVSVVDLYELVQHAGNILPRLYLLCTVGSVYIKSKE
APAKELLQDLVEMCHGVQHPIRGLFLRSYLAQISRDKLIDIGSDYEGDADTVMDAVEFIL
ENFTEMNKLWVRMQLEGPGRVREKREKERSALQELVGKNLHVLSQIEGVDLEIYKETVLP
RVLEQVVNCKDDLSQYYLMDCIIQVFPDEYHLQTLEMLLAACPQVQPTVDIKTVLSRLMD
RLSKYAASSADVLTEFLQVEAFTKLSNAIEKVIEVQVDMPAVGAITLYVSLLTFTLRVHP
DRLDYVDQVLGACVKKLSSIPKLEDSRATKQVVALLSAPLEKYNDTVTALKISNYPRVMD
HLDNGTNKVMAMVIIESIMKNNTCISTADKVEVLFELIKGLIKDLDSATDELDEEDFKDE
QNSVAKLIHMLYNNEPEEMLKIICIVWKHTMAGGPKRLPFTVPSLVFSALRLVRQLQGQE
GDIVGEEVPATPKKIFQLLSQMIEALSAVPSPELALRLYLQCAEAANGCDLEYVAYEFFT
QVFVLYEEEIANSKAQVTAIHLIIGALQRMNVFSVENRDTLTHKTTGYSARLLKKPDQCR
AVYACSHLFWVDGQDGIRDGERVLLCLKRALRIANAAQQMASIARDSSGPVTLFVEILNK
YLYYFEKGNKQITAAAIQHLIELINTEMQGDSATSDAFLASTLRYIQFQKQRGGVMGAKF
ESIKL
NT seq
2358 nt
NT seq
+upstream
nt +downstream
nt
atgttgttaatcggagcagaggacgaagagaaatggctggcggaagggatcgctggtgtt
cagcacaacgctttttacttgcatcgagctttggattccaataatcttagagatgctctc
aagtactcggctcagatgttatcagagctccggacctccaaactctctcctcaaaaatat
tacgaactttatatgcgagcttttgatgaattgaggatattggagatgttttttaaagat
gaaagcaaacacggtgtctctgtggttgatctgtacgagctagttcaacatgccggcaat
attttgcctagattgtatctcctatgcacggtaggatctgtctatatcaaatctaaggag
gctcctgccaaggaacttcttcaagatcttgtggaaatgtgtcatggagttcaacatccc
atacgtggactttttttaaggagttaccttgctcaaatcagtagagacaagttaatagat
attggttctgattacgagggagatgctgacactgtgatggatgctgtggaatttatactg
gaaaatttcaccgagatgaataaactttgggtgcgaatgcagcttgagggacctggtaga
gttagagagaagcgggaaaaagaaaggagcgcacttcaagaacttgtaggaaaaaatctc
catgttctcagtcagatagaaggggtggaccttgagatttacaaagaaacagttcttcca
agagtcttagagcaggttgtcaattgcaaagatgatctttcccaatattatttgatggat
tgcataattcaggtgttccctgatgagtatcacttgcagactcttgagatgttattggca
gcttgcccccaggtccagccaacagttgacatcaagacagttttgtctcgactaatggac
agactgtcaaagtatgccgcttcaagtgctgatgtattaactgaatttctacaagttgaa
gccttcactaaattgagcaatgcaattgagaaggtcatagaagtgcaggtagacatgcct
gctgttggagctataactttgtatgtctctcttcttacctttactcttcgtgttcatcct
gatcggcttgattatgtggatcaagtactgggagcctgtgttaagaagctgtctagcata
ccaaaacttgaagatagccgggcaacaaaacaagtggttgctcttttgagtgctccattg
gagaaatacaatgatacagtaacagccttgaaaatttctaattatccacgagtaatggac
catcttgataatggaacaaataaagtcatggcaatggttatcattgaaagcattatgaag
aataatacatgcatatcaactgcggacaaggttgaggtgttgtttgaattaataaaggga
cttattaaggacctggatagtgctacggacgagcttgatgaagaggatttcaaagatgag
caaaattctgttgctaagctaattcacatgctatataataatgaaccggaggaaatgttg
aagattatatgtattgtttggaagcataccatggctgggggaccaaaacgcctacccttt
acagttccttcacttgttttttctgcacttcggttggttaggcaactgcaaggtcaggag
ggagacatagtgggagaagaagtgccagcaacaccaaagaaaattttccagctcttgagt
cagatgatcgaagcactttcagctgttccatcacctgaacttgctttaaggttgtaccta
cagtgtgctgaggcagctaatggctgtgatcttgagtatgttgcttatgaatttttcact
caagtgtttgtactgtacgaagaagaaattgcgaactccaaagcccaagtgactgcaatt
catctgataattggggctctccagaggatgaatgtatttagtgtcgagaaccgagatact
ttgacacacaagaccacaggatattcagctcgactattgaagaagcccgaccagtgcaga
gctgtttacgcatgttcacatcttttttgggttgatggtcaggacggcattagggatggg
gagagggtcctgctgtgcctaaaacgagcattgaggatcgcaaatgctgctcaacaaatg
gctagtattgcacgagatagcagtgggccagtcacgctctttgttgagatattgaacaag
tacctctattactttgaaaaagggaataaacaaatcaccgctgctgcgatccaacacctg
atagaattaatcaacacagagatgcagggtgattctgcaacctcagatgcttttcttgcc
agtaccttgcgttacattcaattccagaaacaaagaggaggtgtaatgggtgccaaattt
gaatccattaaattgtaa
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