Gossypium hirsutum (upland cotton): 107905748
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Entry
107905748 CDS
T04793
Name
(RefSeq) SWI/SNF complex subunit SWI3B
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
107905748
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ghi03021
]
107905748
03036 Chromosome and associated proteins [BR:
ghi03036
]
107905748
Transcription machinery [BR:
ghi03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
107905748
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
107905748
PBAF complex
107905748
GBAF(ncBAF) complex
107905748
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
Myb_DNA-binding
SWIRM-assoc_1
Myb_DNA-bind_6
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
107905748
NCBI-ProteinID:
XP_016687970
UniProt:
A0A1U8JCE4
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Position
A05:17494854..17497854
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AA seq
464 aa
AA seq
DB search
MAEKSPVKEAASSESIPISNSNQLKPSPQFPSKFSSQTAPNSEVPSTPTSRPPSADADVV
YVPSYSRWFSWDKIDSCESRFLPEFFDGRSASKGPGLYIYYRNSIIKLFRVNPSRKITFT
DVRKTLVGDVGSIRRVFDFLDHWGLINYSASSALSKPSKDTGSNIKSSDSPSVESPSSAA
PTSKHSSNSRRICGACKSLCTIACFVCDKYDSTLCARCYVRGNFRVGLSNADFRRVEITD
EAKADWSEKETLLLLEAIMHYGDDWKKVAQHVGGRTDKDCVAHFVKLPFGEEYLRHPLSN
DDESGFETNKRMCLTPLADASNPIMAQAAFLSALAGVEIAEAAAQAAVSVLSQVDGITAS
RVGIGSLERNSKRESEISSNGDTNQNALERAAYADANSLLDKEELDIERAITGITEVQMK
EIQDKFLRFEEMDLQTEKERQQLESMKNLLFIDQLNLSFRRNYT
NT seq
1395 nt
NT seq
+upstream
nt +downstream
nt
atggcagagaaatcaccggtgaaagaagctgcttcctcagagagcatccccatctcgaac
tcaaaccagttgaagccatctccccaattcccctccaaattctcttcccaaacggcaccc
aactctgaagtcccctccacgcccaccagccgtcctccttccgccgatgccgacgtcgtt
tacgtccccagctactcccggtggttctcgtgggataagatagactcttgcgagtcccgt
ttccttccggagtttttcgacggtcgctcggcttccaaaggccctggtctttacatttat
tacaggaactcaattataaagctattcagggtaaacccttcccgtaagattaccttcact
gacgtcaggaagactcttgttggtgatgttggatccattcggagggttttcgatttcctt
gaccactggggtctcatcaattactctgcctcctctgctctttccaagccctccaaagat
actggttctaacattaaatcctcagattccccttctgttgaatccccttcttctgctgcc
cccacctccaaacactcctctaattccaggcgaatctgtggggcgtgcaagtctctttgt
accattgcttgcttcgtttgcgacaagtatgactccaccctgtgtgcaaggtgttatgtt
cggggcaatttcagggttggtctaagcaatgctgatttcaggcgggtagagatcactgat
gaagccaaggcagattggtcagaaaaagagacattgctgcttctggaagccattatgcat
tatggtgatgactggaagaaggttgcacaacatgttggtggtagaaccgacaaggattgt
gtggctcatttcgttaagcttccttttggggaggaatatctcagacatccattatcaaac
gatgatgaatctggatttgaaactaataaaaggatgtgcctcacgcctctggctgacgca
agcaacccaatcatggctcaggctgcctttttgtcagctttggctggtgtagagattgca
gaagcagctgcccaagcagctgtttctgttctatctcaggtcgacggcatcacggctagc
agagtggggattgggtctcttgaaagaaactcgaaacgagaatcagaaatttcatctaat
ggtgacaccaaccaaaatgcattggaaagagcagcatatgcagatgcaaattcactactt
gacaaggaagaactagatattgaaagggcaattactgggattacagaagtgcagatgaaa
gagatacaagacaagtttcttcgttttgaggagatggatttgcagactgagaaagagagg
caacaattggagagcatgaagaatctcctttttattgaccagctcaatctttcatttcgt
agaaactatacatga
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