Gossypium hirsutum (upland cotton): 107906248
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Entry
107906248 CDS
T04793
Name
(RefSeq) exosome complex component RRP41-like
KO
K12587
exosome complex component MTR3
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
107906248
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107906248
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
107906248
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
107906248
NCBI-ProteinID:
XP_016688690
UniProt:
A0A1U8JEH3
LinkDB
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Position
D05:complement(8802802..8806026)
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AA seq
256 aa
AA seq
DB search
MAAKPGSAPVTYSPNLGQKTRPPIFKDNDLDWVRPDGRGFHQCRPAFFRTGAVNSASGSA
YAELGSTKVIVSVFGPRESKKAMMYSDTGRLNCNVSYTTFATPVRGQGSDHKEFSSMLHK
ALEGAIMLETFPKTTVDVFALVLESGGSDLPVVISCASLALADAGIMMYDLVAAVSVSCL
GKNLVIDPVLEEESYQDGSLMLTCMPSRYEVTQLTFTGEWSTPDINEAMQLCLDACNKLG
KVMRTCLKEAASGSQE
NT seq
771 nt
NT seq
+upstream
nt +downstream
nt
atggccgcaaagcccggttcagctccggtaacgtattcgccgaatcttggccaaaaaact
cgcccccctattttcaaagacaacgatctcgattgggtccgacctgatggccgtggcttc
caccagtgccgaccagcatttttcaggacaggtgcagtaaattctgcttccggatctgct
tatgcagagcttgggagtaccaaggtcattgtatctgtatttgggccaagagaaagtaag
aaagcaatgatgtacagtgatactgggagattaaattgtaatgtcagctatacaacattt
gccactccagttcgaggacagggatcggatcacaaagagttttcgtcaatgcttcataaa
gctttggaaggtgcaataatgttggaaacattccccaagaccaccgtggatgtttttgca
ttggtgttggaatctgggggcagtgatcttcctgtggtgatatcatgtgctagtcttgcc
cttgcagatgcggggatcatgatgtatgaccttgttgctgcagtttctgtgtcctgtcta
gggaaaaaccttgtgattgatcctgttctcgaagaggaaagctaccaagatggaagctta
atgcttacatgtatgccttctcgttatgaggtcactcaactaacatttacaggagaatgg
tcaaccccagatattaatgaggcaatgcagctttgccttgatgcttgcaataagcttggt
aaagtgatgaggacatgcttgaaggaagccgcgtctggctcacaagagtag
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