Gossypium hirsutum (upland cotton): 107906342
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Entry
107906342 CDS
T04793
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107906342
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ghi03041
]
107906342
Enzymes [BR:
ghi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
107906342
Spliceosome [BR:
ghi03041
]
Complex C
Other components
Step II factors
107906342
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
AAA_30
Cas3-like_C_2
nSTAND3
GIPC1_GH2
AAA_16
TsaE
ABC_tran
Sigma54_activ_2
PhoH
Flavi_DEAD
T2SSE
Motif
Other DBs
NCBI-GeneID:
107906342
NCBI-ProteinID:
XP_016688802
UniProt:
A0A1U8JEP9
LinkDB
All DBs
Position
D05:complement(9602363..9607667)
Genome browser
AA seq
1189 aa
AA seq
DB search
MASSPAQDDALKKLEYLSLVSKVSSELESHVGFSDKVLAEFITDMGRHSDTVDEFDVKLK
ENGAELPDYFVRTLLTIIHAILPPKPKAEKESKKAIAGDGKKSKFKALAIADDKDRAKEL
EKEIEMETRDLKKVEGRDRDRGRDRYRRDSDRVRDIDRDKDRSRHRDRYTEDADDDRMDY
GSRGRNRDRTRHNRDGDEDNRDYRNRGRIRDRDNVEGDEGGDKRSNGRYKDNEPELYKVY
KGRVSRVMDSGCFVQLNDLRGKEGLVHVSQMASRRIANAKDVVKRDQDVYVKVISVSGQK
LSLSMRDVDQNTGKDLLPLKKTSDDYSLRINPSGGKEGPVMRTGLSGIRIVEDEDTAPSR
RPLKRMSSPERWEAKQLIASGVLRLDEYPMYDEDGDGMLYEEEGAEEELEIEMNEDEPAF
LQGQTRYSVDLSPVKIFKNPEGSLSRAAALQSALIKERREVREQQQRTMLDSIPKDLNRP
WEDPMPETGERHLAQELRGVGLSAYDMPEWKKDAYGKALTFGQRSKLSIQEQRQSLPIYK
LKKELVQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKR
VAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDEDLSQYSVIMLDEAHE
RTIHTDVLFGLLKQLLRRRADLRLIVTSATLDAEKFSGYFFDCSIFSIPGRTFPVEILYT
KQPESDYLDAALITVLQIHLTEPEGDILLFLTGQEEIDFACQSLYERMKGLGKNVPELII
LPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIDGIFYVVDPGFAKQNVYNPKQ
GLDSLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMSPTSIPEIQRINLGMTT
LTMKAMGINDLLSFDFMDPPAPQALLSAMEQLYSLGALDEEGLLTKLGRKMAEFPLDPPL
SKMLLASVDLGCSDEILTIIAMIQTGNIFYRPREKQAQADQKRAKFFQPEGDHLTLLAVY
EAWKAKNFSGPWCFENFVQSRSLRRAQDVRKQLLSIMDKYKLDVVSAGKNFMKIRKAITA
GFFFHAARKDPQEGYRTVVENQPVYIHPSSALFQRQPDWVIYHELVMTTKEYMREVTVID
PKWLVELAPRFFKQADPSKMSKRKRQERIEPLYDRYHEPNSWRLSKRRA
NT seq
3570 nt
NT seq
+upstream
nt +downstream
nt
atggcttcatctcctgcccaagacgatgcgctgaagaaacttgaatacctctccctcgtc
tccaaggtcagctccgaactcgagagccatgtagggttttccgacaaggttttggccgaa
ttcatcaccgacatgggccgccactccgataccgttgacgaattcgatgtcaagctgaaa
gaaaacggggccgagttacctgattacttcgtccgtacacttcttactatcatccacgct
attctgcctccaaaacccaaggctgagaaggaatccaagaaggcaatcgccggcgacggt
aagaaatctaaatttaaagctttagcgattgcagatgataaagatagagcaaaagaactt
gagaaggaaattgaaatggagacacgagacctaaaaaaagtagagggtagggatagggac
agaggcagagacagatataggagggacagcgatagggtcagagatatagatagagataaa
gataggagtaggcatagagatagatatacggaggatgctgatgatgataggatggattat
ggcagtcggggaagaaatagggatcgaacccgacataatagagatggtgatgaggataat
agggattataggaataggggcaggatcagggaccgggataatgtggaaggtgatgaaggt
ggggataagaggagtaatggaaggtacaaggataatgagcctgagttgtataaggtatac
aaggggagagtttcgagagtgatggattcaggttgctttgtgcagttgaatgatttaagg
ggaaaggagggtttggttcatgtttcccagatggctagtaggaggattgccaatgcaaaa
gatgttgtgaaacgggatcaggacgtttatgtgaaggtaatttctgtttcaggtcagaag
ttgagtttgtctatgagggatgttgatcagaatactggtaaggacttgcttccgttgaag
aaaacttcggatgattattctcttaggattaatccttcaggggggaaagaggggcccgtg
atgagaactggcctttcagggattaggattgttgaggatgaggatactgccccttcacgt
aggccattgaagagaatgagttcgccagagaggtgggaagccaaacaattgattgcttct
ggtgttctgagactagatgagtatcccatgtatgatgaagacggagatggaatgctttat
gaagaggaaggtgctgaggaagaacttgagattgaaatgaatgaggatgaacctgccttt
ttgcaagggcagactaggtactctgtggatctctcaccagtaaaaatatttaagaatcca
gaagggtccttgagtcgcgctgctgctctccagtctgcacttattaaggaacggagagaa
gttcgggagcagcagcagaggacaatgcttgattcaattcccaaggatcttaatcgtcct
tgggaagacccaatgccagagacaggtgagaggcatcttgcgcaggagcttagaggtgtt
ggattgtcagcatatgatatgcctgaatggaagaaggatgcttatggtaaagctttgact
tttgggcagaggtctaaactttccatccaagagcagaggcagagcttgcccatttataaa
ttgaaaaaagagcttgttcaggctgtgcatgataatcaggtactcgtggtcattggtgag
actggttcgggtaagactacccaggtaacccagtatcttgctgaggctgggtacacaaca
aagggtaagattggatgcactcaacctcgaagggtggctgcaatgtctgtcgcgaagagg
gtagctgaggaatttggttgtcggctaggggaggaagttggctatgctattcgttttgaa
gattgcactggaccggatactgtcataaaatacatgactgatggtatgcttcttagggag
attttgattgacgaggatctctctcagtactctgtcattatgcttgatgaagctcatgag
cgaacgattcacactgatgttctttttggattactgaagcaacttctgagacggagagcc
gatcttcgtctgattgttacgtctgctacactggatgcagagaagttttcggggtatttc
tttgactgcagtattttcagcattcccggtagaacatttcctgtagagatactctataca
aaacagcctgaaagcgactacctagatgccgctcttataacagtcctacagatacacttg
actgaacctgaaggtgacattcttctcttcttgactggtcaggaggaaattgattttgca
tgccagtctctttatgagaggatgaaaggtctaggtaaaaatgttcctgaattgattatt
ttaccggtttatagtgcccttcctagtgagatgcagtctaggatttttgatcctgcccct
cctgggaaaaggaaggtggtagtggcaaccaatattgctgaggcttctttaactatagat
ggaatattctatgtggttgatcctggttttgcaaaacaaaatgtctacaatccgaagcaa
gggcttgattccctggtcataacaccaatttcacaagcatcggccaaacaacgtgctggg
cgtgctgggcgtactggacctggaaaatgctaccgcttgtatactgagagtgcatatcga
aatgagatgtcccctacatcgattccagagatccaaaggattaaccttggcatgacaaca
ctaacaatgaaagcaatgggcataaatgatctcctttcttttgattttatggatccacct
gcaccacaagctctcctttctgccatggagcaattatacagtctaggagctctagatgag
gagggacttttgactaaattgggtagaaaaatggcagaatttcctcttgatccaccacta
tcgaagatgttactggctagtgtggaccttgggtgtagtgatgagatattgacaattatt
gcaatgatccaaactggtaacatcttctacaggccaagggaaaagcaagctcaagctgat
cagaagagggccaagtttttccagcctgagggagaccatttgactctacttgctgtgtat
gaggcttggaaagctaagaacttttctgggccttggtgttttgaaaattttgttcagtct
cgatctttacggagggcacaagatgttagaaaacagcttctaagcatcatggataagtac
aaactggacgtagtgagtgcaggaaagaactttatgaagatcaggaaagctatcacagca
gggttcttcttccatgctgcaaggaaggacccacaggaaggatatagaacagtggtggag
aaccagcctgtttatattcacccaagtagcgcccttttccagagacaaccggactgggtg
atctaccatgaactggtaatgactacaaaggagtacatgcgagaggtgacagtgatagat
cccaaatggctggttgaacttgcgcctagattcttcaaacaggcagatcccagcaagatg
agcaagcgcaagcgtcaagaacgtattgagcctctttatgatagatatcatgaacctaat
tcttggcgtctcagtaaacgacgagcctga
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integrated database retrieval system
