Gossypium hirsutum (upland cotton): 107906546
Help
Entry
107906546 CDS
T04793
Name
(RefSeq) U-box domain-containing protein 13 isoform X1
KO
K27628
U-box domain-containing protein 12/13/14 [EC:
2.3.2.27
]
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
107906546
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
ghi04121
]
107906546
Enzymes [BR:
ghi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
107906546
Ubiquitin system [BR:
ghi04121
]
Ubiquitin ligases (E3)
U-box type E3
107906546
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Arm
U-box
ARM_ARMC5
HEAT_2
Neurochondrin
zf-RING_UBOX
MLKL_N
zf-C3HC4_4
zf-Nse
Arm_2
KAP
MCAfunc
zf-C3HC4_2
zf-C3HC4
zf-rbx1
zf-RING_2
Motif
Other DBs
NCBI-GeneID:
107906546
NCBI-ProteinID:
XP_016689063
UniProt:
A0A1U8JK65
LinkDB
All DBs
Position
D05:7995768..8000599
Genome browser
AA seq
671 aa
AA seq
DB search
MEEEKGKLVRSLTDAVNQIAPIGDYRCAVKKEFCNLARRLKLLTPMFEEIRESKEQIPEE
TVKALVSLKEALVSAKELLRFGSEGSKIYLVLERDQIMHKFHEVTARVEQALSGISYENL
DISDEVKEQVELVLAQFRRAKGRVDVPDVELYEDLLSLYNKSNDAAADPDVLRRLAEKLQ
LVGIAELTQESLALHEMVSASCGDPGETFEKMSNLLKIIKDFVQTENPNLDASAREKNLP
SSSGQATTDGNHKTPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIEKWLEQGHGTCPK
TQQTLSSPALTPNYVLRSLIAQWCEANGIEPPKRPGSSRSNKTTSACSPAERTKIEILLR
KLASSSPEDQRMAAGEIRLLAKRNADNRVAIAEAGAIPLLVTLLSTPDSRTQEHAVTAVL
NLSICEENKGSIISFGAVPGIVQVLKKGSMEARENAAAALFSLSVVDENKVTIGASGAIP
PLVTLLSEGTQRGKKDAATALFNLCVYQGNKGKAVRAGVVPTLMRLLTEPGGGMVDEALA
ILAILSSHPEGKSAIGAAEAVPVLVDVIGNGSPRNRENAAAVLVHLCAGDQQHLAEAQEL
GVMGPLMDLAQNGTDRGKRKAAQLLERMSRFVEQQKLAQAQAEAQAQQSQSQSQSEIQQP
HPPSVAYTVDR
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaagaagagaaaggaaagctggtgcggagcttgaccgatgcggtgaaccagatagct
ccaatcggcgattacagatgcgccgtgaagaaggagttttgcaatctcgctaggagattg
aagctgttgacgccaatgttcgaggagattagagaaagcaaagagcaaatccccgaagaa
actgttaaagctttggtctcgctgaaagaagctttggtttcggctaaggagttgctcagg
ttcggcagtgaaggcagcaagatttacctggttctagagagggatcagattatgcataaa
tttcatgaagtgacagctcgggtggagcaagctttgagtggaatttcgtatgagaatctt
gacatatcagatgaagttaaggaacaggtggagcttgttctagctcagttcaggagagct
aaaggaagggttgatgttccggatgttgaactgtacgaggatctattatcactctacaat
aaaagcaacgatgctgcagcagatccagatgttctaaggagattagccgagaagttacaa
ttggttgggatagctgaacttacgcaagaatcactagctctacatgagatggtttctgcc
agttgtggagatcctggggaaacatttgaaaagatgtcaaacttactaaagataatcaag
gattttgtacagacagaaaatcctaatttggatgcttctgcaagggaaaagaatcttcct
agtagtagtgggcaagcaaccactgatggaaatcataagactccagttataccagatgat
ttccgctgtccaatatccctggagttgatgaaggaccctgtcattgtttccacagggcag
acttatgaacgttcttgcattgagaaatggctggagcaaggtcatggaacgtgtccaaag
acacaacagaccctcagtagccctgctcttacgcccaattatgtattgcgtagtctaata
gctcaatggtgtgaggcaaatggcattgagccgcctaaaagacccggtagttctcgatcc
aataaaaccacatctgcctgctcacccgctgaacgtaccaagattgaaattctcctccgt
aagcttgcatccagcagtcctgaagatcaaagaatggctgcaggtgaaatccgtcttctt
gccaaacgaaatgcagataatcgtgtggccattgctgaagctggggccatacctctcctt
gtgaccctcctttcgacacctgattcacggacccaagaacatgctgtaacagcagttctt
aacctttccatttgtgaagagaacaaaggaagtatcatatcttttggagcagttcccggt
atagtccaggtgcttaagaagggaagcatggaagctagagagaatgcagcagctgccctc
ttcagcctctcagtagtggatgaaaataaggtgacaattggtgcctcaggagcaattcct
cccctagtgacattgctaagtgaaggcacacaaagggggaaaaaagatgcagcaacagca
ctctttaatttgtgcgtttaccaagggaacaagggaaaagcagtgagagccggagttgtc
ccaacattaatgcgtttgttgacagaacctggaggaggaatggtggatgaggcattagcc
atacttgcaatactctcaagccacccggaaggtaagtctgccataggagcagcagaggca
gtgccagttttggtagatgttattggtaatggatctcctaggaatagggagaatgcagct
gcggttttggtgcacctctgtgccggagaccaacagcatttagcagaggcccaggaacta
ggagtgatgggtcctttgatggacttggctcaaaatggtacagatagggggaagcggaag
gctgctcaattgcttgagcgcatgagcaggtttgttgagcagcaaaagcttgcacaggcg
caagctgaggcccaagctcaacagtcccagtctcagtctcaatctgagattcaacaacca
cacccaccctctgtggcatacactgttgatagatga
DBGET
integrated database retrieval system
