Gossypium hirsutum (upland cotton): 107906649
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Entry
107906649 CDS
T04793
Name
(RefSeq) syndetin isoform X1
KO
K23288
syndetin
Organism
ghi
Gossypium hirsutum (upland cotton)
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
ghi04131
]
107906649
Membrane trafficking [BR:
ghi04131
]
Protein recycling
Others
EARP complex
107906649
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Ortholog
Paralog
GFIT
Motif
Pfam:
Vps54_N
Syndetin_C
EcoR124_C
Motif
Other DBs
NCBI-GeneID:
107906649
NCBI-ProteinID:
XP_016689193
UniProt:
A0A1U8JLK7
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Position
D05:7140206..7154895
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AA seq
1099 aa
AA seq
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MQQPNLFPFGSVLGNPFLLNGGVGDLSDGGFDSSRVFFLVPFLLFQGGGMDLSKVGEKLL
SSVRSARSLGLLPSSPSSDRPEVPARAAAAAAVARALSGLPPDQRYSLPSSSEELMSIYG
SKPQSQIVEDVEEKFYEEEFDPIKHVLEHIPSDENELEYFEKQATLRLAQLDRVAEQLSR
NVMEHHEVMVKGMNLVRELEKDLKIANVICRNGRRHLTSSMNEVSRDLVVNTDSKKKQAL
MHLLPVLAELLHARDMQVSLESLVEEGNFCKAFQVLSEYLQLLDSFSELSAIQEMSRGVE
VWLGRTLQKLDSLLLGVCQEFKEEGYLTVVDAYALIGDVSGLAEKIQSFFMQEVISETHS
VLKSIILYEDQDVHMQNSRLTYSDLCLQIPESKFRQCLLRTLAVLFKIMCSYHEIMGFQL
ENKVLECPVTNAKLMKDGIPGSSSIKESTTATSSADTSGRMDSGNVESDKPVSDGRNGDG
ATSSSGSPWYQLRKEAITFVSQTLQRGRKNLWQLMTSRVSVLLSASAAASTSIHQFLKNY
EDLSTFILAGEAFCGVEAFEFRQKLKGVCGNYFAAFHRQNVFALKMVLERETWLRLPPET
AQIISFAGLVGDGAPLIAASDGRSSNSRVLRADKLANKVDTGAKKSGFSPWLRNGNPFLL
KVSSSHKEAHNSSPLNGTTSVEYEGNADNIHGDVSPRGDENHINGANSISEEENEDLLAD
FIDEDSQLPSRISKPNLSRNYSPHFSNDDFTAQTGSSLCLLRSMDKYARLMQKLEIVNVE
FFKGICQLFEMFFYFVFETFGLQNMNSSGKTLTDSLNYRLKTALSQVTQDCEEWIKTSSG
SLSSSTAHADLTPTAPQNTNFGSPAGTSFGLKERCAGADTVALVARILHRSRTNLQSLLL
KSNTAIVEDFFVHLVGAVPDLVEHIHRTTARILLHINGYVDRIANAKWELKELGMEHNGY
VDLLLGEFKHYKTRLAHGGIQKEVQDLLLDYGLEIVAETLIEGLSRVKRCTDEGRALMSL
DLQVLINGLQHFVSINVKPKLQIVETFIKAYYLPETEYVHWARAHPEYSKNQIVGLINLV
ASMKGWKRKTRLEVLEKIE
NT seq
3300 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagccgaatctgttcccgttcggcagcgttttggggaatccgtttttgttgaat
ggcggcgttggcgatttaagcgacggtggatttgacagctctagggttttctttttggtc
ccttttttgttattccaaggaggtggaatggatttgtccaaggttggggagaaactcctc
agctccgtgcggtccgcgcgatcacttggtctcttgccttcttctccctcttctgatcgg
cccgaggttccagctcgagctgcagcagcagcggctgttgctcgtgctctttcaggattg
ccacctgatcagagatatagtcttccatcgagttctgaagaactgatgtcaatatatgga
agcaaacctcagagtcaaatagtggaagacgtagaggaaaaattctatgaggaggagttt
gatccgataaaacatgtcttggagcatattccttctgatgaaaatgaactagaatatttt
gagaaacaggccacacttagattagctcaactggatagagtagcagaacaattatcccgc
aatgttatggagcatcatgaagtaatggtgaagggtatgaatttggtcagggaattggag
aaagacttgaagattgcaaatgtcatctgcaggaatggcagaaggcatctaacatcatca
atgaacgaggtttctagggaccttgttgtgaatactgattctaagaagaaacaggctctt
atgcacttgcttccagtactagctgagcttcttcatgcacgggacatgcaagtatccctt
gagtctctggtcgaggaaggtaatttctgcaaggcatttcaagtactatccgagtattta
caactactagatagcttctcagagctttcagcaatacaagagatgagccgtggggttgag
gtttggctaggaagaactcttcaaaagctggactcactcttgttaggagtttgtcaggag
tttaaagaagaaggctatttaactgtggttgatgcttatgctttaataggagatgtctct
ggtcttgccgagaagatacaaagttttttcatgcaagaagttatctcagaaacccactct
gtcttgaagagtattattctctatgaggaccaagatgtacatatgcaaaatagcagactt
acctacagtgatctatgccttcagatacctgaatctaagtttagacagtgtttgttaagg
acactagctgtcctgttcaaaataatgtgttcatatcatgaaatcatgggctttcagctg
gagaataaggttttagagtgcccagtaacaaatgccaaattgatgaaagacgggatacca
ggttcatcttccataaaggagtctacaacagccacttcctcagctgatacatctggaagg
atggattctggaaatgtagaatctgataaaccagtttctgatggtagaaatggcgatggt
gctacatcaagcagtggatctccatggtatcaattaaggaaagaagccataacttttgtg
tcacaaactcttcagaggggacgtaagaatctttggcaacttatgactagccgagtatca
gtactgctgtctgcttctgctgctgcttctacaagcattcatcaatttttgaaaaactat
gaagatcttagcacattcatcttggctggggaagccttctgtggagttgaggcttttgag
ttcaggcagaaattgaagggtgtctgcggaaattattttgctgcatttcatcggcaaaat
gtatttgcacttaaaatggttttggagagagaaacctggcttagattgccaccagagacg
gcacaaataattagttttgctgggctagtaggtgatggagcacccttaattgctgcctct
gatggtaggtcttctaattctagggtgcttcgcgctgacaaattagcaaacaaagttgac
acaggtgccaagaagagtggattttctccttggcttagaaatggaaacccatttttgcta
aaagtaagctccagtcacaaagaggctcataattcctccccacttaatggaaccacctct
gttgaatatgagggaaatgctgataatattcatggtgatgtctctcctcgtggtgatgaa
aatcatatcaatggtgccaattccatctcggaagaggaaaacgaggatttacttgctgac
tttattgatgaggatagtcaactccctagtcgaatttcaaaacccaacctttcaagaaat
tactctcctcatttcagtaatgatgattttacagcacaaacaggatcatctctttgtctt
ctgaggtcgatggataagtatgcaagattgatgcagaaacttgaaatagtaaatgttgag
ttttttaagggcatatgccagttatttgagatgtttttctattttgtatttgaaacattt
ggtctgcaaaacatgaattcgagtggaaagaccttgacggactctcttaattatcggtta
aagactgccttatcacaagtaacgcaagattgtgaagagtggataaaaacttcatcagga
tccttatcatcttcaaccgcacatgcagatttgacacccactgctcctcaaaatacaaat
tttggttctccagcaggcacctcctttggtctaaaggaaagatgtgcaggtgctgatact
gtagctcttgtagctcggatattgcatagatctagaactaatctccaatcattgctatta
aagagtaatacagctatagttgaagatttctttgtgcacctggtgggtgctgtgccagat
cttgtggagcacatacataggacaactgcaagaatactgcttcacattaacgggtatgtt
gatcgaattgctaatgcaaaatgggaattgaaagagcttgggatggagcacaatgggtat
gtggatttgttgttgggagaatttaagcactacaaaacaaggcttgctcatggaggaatt
cagaaagaggttcaagacctcctattggactacggactcgaaattgttgcagaaactctt
attgaaggtctatcacgagtgaagcgatgcactgatgaaggacgagctctcatgtcatta
gaccttcaggttttaatcaatggcctacaacactttgtctccataaacgtgaagccaaag
ttacagattgttgaaactttcatcaaggcttattatctacctgaaactgaatatgtacac
tgggcacgagctcatccggaatatagcaagaatcagattgtggggttgataaaccttgtt
gcttcaatgaaaggttggaaaagaaaaaccaggttggaagttctggaaaagatcgaatga
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integrated database retrieval system
