Gossypium hirsutum (upland cotton): 107906954
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Entry
107906954 CDS
T04793
Name
(RefSeq) uncharacterized protein LOC107906954
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
ghi03015
mRNA surveillance pathway
ghi03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
107906954
09122 Translation
03013 Nucleocytoplasmic transport
107906954
03015 mRNA surveillance pathway
107906954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107906954
03041 Spliceosome [BR:
ghi03041
]
107906954
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
107906954
Spliceosome [BR:
ghi03041
]
Complex C
Other components
EJC/TREX
107906954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
107906954
NCBI-ProteinID:
XP_040939962
UniProt:
A0ABM2ZCK1
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All DBs
Position
A12:complement(70319709..70321780)
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AA seq
538 aa
AA seq
DB search
MSSKHEILDNRPIDKWKVIELKEELKRRKLTTRGLKKDLVKRLDEAIRAERENNTANEAD
NGFNYDEGVEKAMPSIVEKVEDDGGSGLKLKDDVIDCATASGHGVVQTEITLAHTLVTEV
PVVGQNLQISKLEENVNSNIQVENDGPKLEVERDDPKAQLGNEDGMRASSALNNQVSEIN
TISTDSVSGNEKIELKDTVIDDNAKQSLDVVPMDDEQPLENKASVDERDDKNDTTTNISS
KNDSGEMWYSEKLNLDRSSADESMEEDLLETKQIDPKCTSDEIGENSVENEEGMPPVVRD
GSSTDRKDVFVVPAEKRKFYDDEAIGNIEATKRHKWNSDNLQVVVQQATNHTVTNNTSED
SPGERLVPPSQKPPSTSLRVDNFLRPFTLKAVQQLLGKTGIITSFWMDHIKTHCYVTYLS
VEEAIETRNAIYNLQWPPNGGRLLVAEFVDPHEVENRVESPPPTTTVTDNCGFTAHQQQV
SEQQPLSPPPPEEPDSPMLTLDDLFRKTKATPKIYYLPLSEEQVAAKQATHYRHTKHW
NT seq
1617 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaaagcacgaaatacttgataatcgaccaattgataaatggaaggttatagag
ttgaaagaagaactcaagagacggaagttgacaactcgaggcttaaaaaaggacttggta
aaacggttagatgaagctattagggcagaaagggaaaacaatactgcaaatgaggcagat
aatggttttaattatgatgaaggggtcgagaaagcaatgccaagtattgtagagaaagtt
gaagatgatggtggtagtgggttgaagttgaaggatgatgttattgattgtgcgactgct
tcgggtcatggagtagttcagactgaaataacacttgcccacactctggtaacggaggta
ccagtggttggacaaaatttgcagatctcgaaactagaagaaaatgtgaattctaacatc
caagtggagaatgatggtccgaagcttgaggtggagagggatgatcccaaggctcagctg
gggaatgaggatggcatgcgtgcctcttctgctttgaacaatcaggtatctgagatcaac
actatttctactgattctgtgtcaggtaatgaaaagattgaactaaaggataccgtaatt
gatgataatgcgaaacaaagcctagatgttgtaccgatggatgatgaacaaccacttgag
aacaaggcatctgttgatgagagagatgacaagaatgatacaactacaaacataagcagt
aaaaatgacagtggagagatgtggtactctgagaaattaaatttagatagaagttctgcc
gatgaatcaatggaggaagatttgcttgaaactaagcaaattgatccaaaatgtacttct
gatgaaataggagaaaatagtgtggaaaatgaggagggaatgcctcctgttgtacgagat
ggttcatctacagacagaaaggacgtctttgttgttcctgctgagaaaagaaagttttat
gatgatgaagctattgggaacattgaggctacgaaaagacataaatggaactctgataat
ttacaagttgtagtgcagcaagccactaatcatacagtgaccaacaacactagtgaagat
tcacccggagaacgacttgttccaccttcacaaaaacctccgagcacttcacttagagtt
gataattttcttcggccttttaccttgaaagcggtgcaacaacttttaggcaaaactggg
ataattacaagcttctggatggaccacattaagacccattgttatgttacatatttatct
gtggaagaagcaatagagacacgaaatgccatttataacctgcaatggccacctaatggg
ggtcgtctgttggtggctgaatttgttgatcctcatgaagttgaaaatcgggtggaaagt
ccaccaccaactacaactgtcaccgacaactgtggttttactgctcatcaacaacaggtt
tctgaacagcagcctctttcaccacctcctccagaggaaccggattctcctatgctaacc
cttgatgacctatttcgaaaaaccaaagcaactcctaagatctattatttgcctctgtca
gaagaacaagttgctgcaaagcaagctacacattacagacacaccaaacactggtga
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