Gossypium hirsutum (upland cotton): 107907121
Help
Entry
107907121 CDS
T04793
Name
(RefSeq) pre-mRNA cleavage factor Im 25 kDa subunit 1 isoform X1
KO
K14397
cleavage and polyadenylation specificity factor subunit 5
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
107907121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107907121
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor Im (CFIm)
107907121
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NUDIX_2
NUDIX
Motif
Other DBs
NCBI-GeneID:
107907121
NCBI-ProteinID:
XP_016689843
UniProt:
A0A1U8JMB5
LinkDB
All DBs
Position
D05:complement(2835118..2839036)
Genome browser
AA seq
218 aa
AA seq
DB search
MGDLHMGVEADAINDSSSDNHSKRVDIYPLSCYYFGSKEAIVFKDETLFDRINRMKSNYA
AYGLRTSVEAVILVELFKHPHLLLLQVRNSFFKLPGGRLRPGESDIDGLNRKLSRKLSAS
EDGNETEWQVGECLGMWWRHDFETLMYPYLPSNAKKPKECTKVFLVRLPESQKFIVPKNL
KLLAVPLRQVHENHKTYGPIISGVPQLLSKFTINIVDI
NT seq
657 nt
NT seq
+upstream
nt +downstream
nt
atgggagatcttcacatgggagtagaagcagatgcaatcaacgatagtagcagcgataat
catagtaaaagggtggatatttacccactaagttgttactattttggatccaaagaagcc
attgttttcaaggatgaaactctgttcgatcgtatcaataggatgaaatccaattatgct
gcctatggattgaggacttccgtggaagcagttattctggttgagttgttcaagcaccct
catcttttgctgctgcaagttaggaattccttctttaagcttcctggtggccgtttgagg
cctggtgaatcagatattgatggactgaaccgtaagctttccaggaagctttctgctagt
gaagatggcaatgaaactgaatggcaggtgggtgaatgtcttggcatgtggtggcggcat
gatttcgaaaccttaatgtatccatacttgccatccaatgcgaaaaagcctaaggagtgc
accaaagtcttccttgtgaggttgccggagagtcaaaaatttatcgtacccaaaaatctc
aaattgcttgcagttccactgcgccaggttcatgaaaaccacaagacatatggaccgata
atatcgggagtgccacagttgctatccaagttcaccatcaacattgttgacatttag
DBGET
integrated database retrieval system
