Gossypium hirsutum (upland cotton): 107907238
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Entry
107907238 CDS
T04793
Name
(RefSeq) nuclear pore complex protein NUP98A isoform X1
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
ghi
Gossypium hirsutum (upland cotton)
Pathway
ghi03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
ghi00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
107907238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ghi03019
]
107907238
03036 Chromosome and associated proteins [BR:
ghi03036
]
107907238
Messenger RNA biogenesis [BR:
ghi03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
107907238
Chromosome and associated proteins [BR:
ghi03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
107907238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nucleoporin2
Nup98_GLEBS
Motif
Other DBs
NCBI-GeneID:
107907238
NCBI-ProteinID:
XP_016690011
UniProt:
A0A1U8JIA6
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All DBs
Position
D08:complement(39378016..39385515)
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AA seq
998 aa
AA seq
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MFGTTNPFGQPASSPFGQTNPSSNPFAPKSSFGSPTPFSSQTGGSLFGGTSTGVFGAAQP
SSPFSSTTTFGASSSPAFGSSVPAFGSSSTPAFGNSSSSFGGPSGFGQKPAFGFGSTPTQ
SSPFGSSGQQSQPTFGSGIFGSSTPFGSTQSAFGATSTPAFGATSTPAFGATSTPAFGAT
STPAFGATSTPAFGATSTPAFGATSTPAFGATSTPAFGSTSSPAFGSTGSPFGSTGTAFG
VSNAPAFGASSTPAFGTSSTPAFGASSTPSFSFGSSPAFGQSTAAFGSSPFGTTTVGAQS
SPFGSQSSSPAFGSTTFGQSAFGGQRGGSRVAPYTPTTDADSGSGTQPAAKLESISAMHV
YKDKSHEELRWEDYQLGDKGGPQPAAQPSGGIGFGVSAAPASPFGSSSTIGQTPANPFSG
TSANPFSIKPPSFNSASFTTSTTTSNPFQSTSSSLFGSSSSTTPSIFSSSAPAFGTGSSL
FSSSVSPSFSSSPSIFGTGAAPATTPTFATGLNFGSSQGSSLFNSTPAIGQASSTFGQNT
SSFGPTSIFNTPSTGFSGNMFSSSLSLPPSSNPTAFGSTTPSFASPFQPAQTSGAFSFSN
LGQTQMSGGSGIFGQSNVGLPSVTQNAAVVQPVTISNPYGTLPAMPQMSIGRAGTAPSVQ
YGISSMPVTDKPVPVRISPLLTSRYISQRRIRLPARKYHPNNDNPKVPFFNDDEETPSTP
KADAVFIPRENPRALVIRPTENWPSRASVEKVSPLKDASTLVHENGKISDDGSNAEDKDK
NPAENGLVKEQIHHNQKANGVHDDHSVQKEDSFRTLSGHRAGEAAIVYEHGADVEALMPK
LRRSDYYTEPRIQELAAKERAEPGYCRRVKDFVVGRHGYGSIKFLGETHVRCLDLESLVQ
FNNREVIVYMDDSKKPPVGQGLNKPAEVTLLNIKCFDKRTREQYTEGPKVEKYKEMLKKK
AEDQGADFLSYDPIKGEWRFRVNHFSKYQLEDEEEDVL
NT seq
2997 nt
NT seq
+upstream
nt +downstream
nt
atgtttggtacaactaacccttttgggcaaccagcaagtagcccatttggccagaccaat
ccaagtagcaatccgtttgcacctaaatcttcctttggtagtccaactccttttagctcc
caaacagggggttcactatttggtggtacttctactggggtgtttggtgcagcccaacct
tcttctccattttcctcaacaacaacctttggtgcatcatcatctccggcatttggaagt
tccgtgcctgcttttgggtcttcgtctactcctgcttttggcaattcatcatcatctttt
ggtgggccttctggttttggtcagaagccagcatttggttttggatctactcccactcaa
tcaagtccttttggaagctcagggcagcaatcacaacctacatttggtagtggaatattt
ggttcctccacaccctttggttcaacacagtctgcatttggtgccacaagcacccctgcg
tttggtgccacaagcacccctgcgtttggtgccacaagcacccctgcgtttggtgccaca
agcacccctgctttcggtgccacaagcacccctgctttcggtgccacaagcacccctgct
ttcggtgccacaagcacccctgctttcggtgccactagtaccccagcctttggttccaca
agcagccctgcctttggttcaactggaagtccttttgggagcactggaactgcatttggt
gtgtctaatgccccagcatttggagcatcaagcacacctgcttttggcacatctagcact
ccagcttttggagcgtcttctactccttccttcagctttgggtctagccctgcttttgga
caatcaacagcagcatttggtagtagtccttttgggacgactacagttggagcacagagt
tccccttttggaagccaatcctcttctcctgcatttggaagcacgacctttggccagtct
gcatttgggggtcaacgtggaggcagtagagtagctccttatacacctacaactgatgca
gatagtgggagtggtacacagcctgctgcaaaattggagtcaatatcagcaatgcatgtt
tacaaagataaaagtcatgaggagctgagatgggaggattatcagttaggagataaaggt
ggaccgcaaccagctgctcagccttctggagggattggctttggtgtgtcagctgcacct
gcaagtccttttggctcttcttcaacaattggtcaaacacctgcaaatccattttccggc
acgagtgctaatccatttagtataaaacccccatcctttaatagtgcaagttttacaacc
tcaactactacatcaaatccttttcaatcaacatcatcaagcctttttggctcatcttca
tcaacaacaccttcaatatttagttcttcagctcctgcatttggaactggttcatctctt
tttagttcatctgtatctccttcattttcatcatcgccatccatatttggtactggtgca
gctccagcaacaacacccacatttgccactggtttaaattttggcagcagtcaggggtct
tctctgttcaattctacccctgcaattgggcaggcaagctctacctttggacagaatact
agtagctttggtccaactagcattttcaatacaccttccactgggtttagtgggaatatg
ttttcgagctctctgtcattgcctccttctagcaaccctactgcctttggctcaacaact
ccctcttttgcttcacctttccagccagctcagacttctggagctttcagctttagtaat
cttggtcagacacaaatgagtggtggatcaggcatttttggtcagagtaatgttggccta
ccgtctgtgacacaaaatgctgctgtagtacaacctgtgactattagtaatccctatgga
acactccccgcaatgcctcaaatgtcaattggtcgggctgggactgcaccatctgttcaa
tatgggatttctagcatgcctgtcacggacaaacccgttcctgttagaatatcgcccctg
ttgacttcacggtacatttcacaaagacggattaggttgcctgcaaggaaatatcatcct
aataacgacaatccaaaggttccatttttcaatgacgatgaagagacacccagcacacct
aaggctgatgctgtttttattcctagggaaaatccaagggctctggttattcgtcccact
gaaaattggccttcaagagcttctgtagagaaggtatcgcctttgaaggatgcatccact
ctggtgcatgagaatggcaaaatttctgatgatggctccaatgctgaggataaagataaa
aatccagctgaaaatggccttgtgaaggagcagattcatcataaccagaaagctaatgga
gtccatgatgatcattctgtacagaaagaggattcgttcaggacactcagtggccacagg
gctggtgaggctgctattgtgtatgagcacggggctgacgttgaggctctaatgccaaag
ctcaggcgttctgattactatacagaaccccgaatccaagaactggcagcaaaggaaagg
gctgaaccagggtactgtcgccgtgtcaaggactttgtggttgggcggcatggttatgga
agcataaagttcctgggtgagacacatgtgagatgccttgatctagagtcccttgtccag
ttcaacaaccgtgaggtaattgtttacatggatgacagcaagaaacctcctgttggacaa
ggtcttaataaacctgcagaagtaacgcttctcaacatcaagtgcttcgacaaaaggacc
agagagcagtatacagaagggccaaaagtggagaaatataaggagatgcttaagaagaag
gctgaggaccaaggagcagactttctctcctatgatcccatcaaaggagaatggaggttc
agggtaaatcacttcagcaagtaccagttggaagacgaagaggaagatgtgctgtaa
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